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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042045 ID=TCONS_00042045|Name=TCONS_00042045|organism=Clytia hemisphaerica|type=transcript|length=483bp
GCAAAAGAGACAATAAAAACGGGAGACTCTTTATGTGGATATTATTATGt
tgctttttttgttttgggTATTCTTATTATGTGTGGCGGAATTTTTGGAT
ATATCAACCACCCCGCTGAAGCAGGTGTTGCTACTGGAGTGTATATTGTC
TTCCATTTATTTGATGGAGCAATTTGTCAAATGGATTTCGAATGTAAACG
TTTGAAGGTCTTGCAATGGCAGTTTTGTTTTGCTTTGCTTGGAACCCTTT
GTATTGAGTCGTCGATTATGAAATCTATTTTCGGAGCATGGGCTGTGCTG
TCATTCAGTCACACAGTTATAGCAGCCATTAGGCTATATTGTGGTAACGG
TTTAAACAGTTTAGGATTAACTTTTGGAGGAAGCAATGAAACAAGGATTG
ATtgggaaaagaaaatcaaacaaaatataCGAACAGCGCCTGAATTTGTA
ACATATTGTGAAGTAAGAGAACCAAAACCGCNT Run BLAST on NCBI protein sequence of TCONS_00042045-protein >TCONS_00042045-protein ID=TCONS_00042045-protein|Name=TCONS_00042045-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
AKETIKTGDSLCGYYYVAFFVLGILIMCGGIFGYINHPAEAGVATGVYIV
FHLFDGAICQMDFECKRLKVLQWQFCFALLGTLCIESSIMKSIFGAWAVL
SFSHTVIAAIRLYCGNGLNSLGLTFGGSNETRIDWEKKIKQNIRTAPEFV
TYCEVREPKPX Run BLAST on NCBI transcript from alignment at sc0003168:627..1833- Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042045 ID=TCONS_00042045|Name=TCONS_00042045|organism=Clytia hemisphaerica|type=transcript|length=1207bp|location=Sequence derived from alignment at sc0003168:627..1833- (Clytia hemisphaerica)
GCAAAAGAGACAATAAAAACGGGAGACTCTTTATGTGGATATTATTATGT
TGCTTTTTTTGTTTTGGGTATTCTTATTATGTGTGGCGGAATTTTTGGAT
ATATCAACCACCCCGCTGAAGCAGGTGTTGCTACTGGAGTGTATATTGTC
TTCCATTTATTTGATGGAGCAATTTGTCAAATGGATTTCGAATGTAAACG
TTTGAAGGTCTTGCAATGGCGTAAGTATACATAAAGTCTCCCTGCGTAAT
CTTTTTATTGTCATTACGCTCTAAAAAAGTAAATGTACCAGATGCAGCTT
TAGATTCACTGCATTTTTTGGGCTCCCAAAATATTTATTTTTCATTGTCA
TCAAAAGCTATGTGTGTGATGCCAAGGACCTCAATCTGGTACCCAGAGCA
ACTTAGAAAACTTTTTAATTTTACGGGGAGGACTGGATTAGAGTTTGCAA
AGACCTTTAGTTCATTTGAATTGATCGGGACAGAATTATATCGAATTGGC
TAGAGCTACTTAAAATTAGTAACTATGGTCATGCCCGAAAAATAAATAAA
TTCCTGATTAAACACGTTTTATGACCACCATTTTCGATTTTCCACTACGC
ATTTATTTTGGGGAAGTATCTGCTAAATCAGTGAAAATAAATAGACAAAA
AAAGTATTAAGAATGGGCTACTCTTTTTACTTATTTATTTAACCAGGGCG
AACACTTATTCGCCTTTTCTACAGGACCATTTCCGGAGAGCTTAAAGCTA
ATTTTCTCAAACTGGAAACTTGTTTCTTATCAAATTTGGAAACGAAAGAT
GTTTCGGGAAATTTTCCACCTTCCCGTTCGGGAAGTATTTCCCGTTAAGC
TAATACTTACCATTTCTCTATAGCGTAACTGACTGGTTGTGGATATAGAA
CAGATTCATATAGGTAACTAAAACTTATTTTCTCTCACTTTTAGAGTTTT
GTTTTGCTTTGCTTGGAACCCTTTGTATTGAGTCGTCGATTATGAAATCT
ATTTTCGGAGCATGGGCTGTGCTGTCATTCAGTCACACAGTTATAGCAGC
CATTAGGCTATATTGTGGTAACGGTTTAAACAGTTTAGGATTAACTTTTG
GAGGAAGCAATGAAACAAGGATTGATTGGGAAAAGAAAATCAAACAAAAT
ATACGAACAGCGCCTGAATTTGTAACATATTGTGAAGTAAGAGAACCAAA
ACCGCNT Coding sequence (CDS) from alignment at sc0003168:627..1833- >TCONS_00042045 ID=TCONS_00042045|Name=TCONS_00042045|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0003168:627..1833- (Clytia hemisphaerica)
AGTTTTGTTTTGCTTTGCTTGGAACCCTTTGTATTGAGTCGTCGATTATG
AAATCTATTTTCGGAGCATGGGCTGTGCTGTCATTCAGTCACACAGTTAT
AGCAGCCATTAGGCTATATTGTGGTAACGGTTTAAACAGTTTAGGATTAA
CTTTTGGAGGAAGCAATGAAACAAGGATTGATTGGGAAAAGAAAATCAAA
CAAAATATACGAACAGCGCCTGAATTTGTAACATATTGTGAAGTAAGAGA
ACCAAAACCGCNTGCAAAAGAGACAATAAAAACGGGAGACTCTTTATGTG
GATATTATTATGTTGCTTTTTTTGTTTTGGGTATTCTTATTATGTGTGGC
GGAATTTTTGGATATATCAACCACCCCGCTGAAGCAGGTGTTGCTACTGG
AGTGTATATTGTCTTCCATTTATTTGATGGAGCAATTTGTCAAATGGATT
TCGAATGTAAACGTTTGAAGGTCTTGCAATGGCAGTTTTGTTTTGCTTTG
CTTGGAACCCTTTGTATTGAGTCGTCGATTATGAAATCTATTTTCGGAGC
ATGGGCTGTGCTGTCATTCAGTCACACAGTTATAGCAGCCATTAGGCTAT
ATTGTGGTAACGGTTTAAACAGTTTAGGATTAACTTTTGGAGGAAGCAAT
GAAACAAGGATTGATTGGGAAAAGAAAATCAAACAAAATATACGAACAGC
GCCTGAATTTGTAACATATTGTGAAGTAAGAGAACCAAAACCGCNTGCAA
AAGAGACAATAAAAACGGGAGACTCTTTATGTGGATATTATTATGTTGCT
TTTTTTGTTTTGGGTATTCTTATTATGTGTGGCGGAATTTTTGGATATAT
CAACCACCCCGCTGAAGCAGGTGTTGCTACTGGAGTGTATATTGTCTTCC
ATTTATTTGATGGAGCAATTTGTCAAATGGATTTCGAATGTAAACGTTTG
AAGGTCTTGCAATGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042045-exon-sc0003168-1575043694:1614..1833 | TCONS_00042045-exon-sc0003168-1575043694:1614..1833 | Clytia hemisphaerica | exon |
| TCONS_00042045-exon-sc0003168-1575043694:627..889 | TCONS_00042045-exon-sc0003168-1575043694:627..889 | Clytia hemisphaerica | exon |
| TCONS_00042045-exon-sc0003168-1510915933:1614..1833 | TCONS_00042045-exon-sc0003168-1510915933:1614..1833 | Clytia hemisphaerica | exon |
| TCONS_00042045-exon-sc0003168-1510915933:627..889 | TCONS_00042045-exon-sc0003168-1510915933:627..889 | Clytia hemisphaerica | exon |
| TCONS_00042045-exon-sc0003168-1491911889:1614..1833 | TCONS_00042045-exon-sc0003168-1491911889:1614..1833 | Clytia hemisphaerica | exon |
| TCONS_00042045-exon-sc0003168-1491911889:627..889 | TCONS_00042045-exon-sc0003168-1491911889:627..889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003168 | supercontig | sc0003168:627..1833 - |
Blast
The following BLAST results are available for this feature:
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