TCONS_00042037 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042037
Unique NameTCONS_00042037
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042037 ID=TCONS_00042037|Name=TCONS_00042037|organism=Clytia hemisphaerica|type=transcript|length=1773bp
CATTACAGGGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGC
TTGTATTTCTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCA
ACAGGTGGAATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAG
CTGGAGTGTTCACTTTATCCCTCACAAATCCCATATGGGTAATCAAGACA
AGAATGTGTTTACAGACTGGCGCAACGAGCGTCAATGAAGTTTATTATTC
AGGTGTTTTAGATGGGTTAAAGAAGTTGTATCAACAGGAAGGCTTGAGAG
GCTACTATCGCGGTTTTGTACCGGGATTATTCGGAGTATCACACGGTGCT
TTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAGGAGTAAATACAC
TGGACAGCCAGCTGAATCCAAATTGAATCCTCTGGAGTACATCGCCATGG
CAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTATCAAGTT
CTTCGATCGCGGTTACAAGATGCACAATATCTTGGTCATTATAATGGGAT
GGTGGACACATTCCAAAAAATCTTAAGaCATGAAGGAGTGAGCGGCTTAT
ATAAAGGAATGTTTATGTCCATGCTCAGAGTGACACCTGCGTGTTGTATC
ACTTTTCTGGTTTACGAAAATGTCAGCCATTTCTTGCTGGAGAAGAATTA
GATGATCGTTTTTCGAGAGCACCAGGAGTTGGAGAAAAGTGATTTGATCC
AATACTTTGGCGATGTTGGTGAAAGTCATTAAAGATTACCCAAATGATAT
TTCATGGACTGTAGCTTGCCAGTTCATGGCCGATTTTTCAGATTTATAGC
ATCAATAATCAGAGCATATAAGACATGCTCGGGTCAACCAACATTGGTGT
TGAGAAAGCCGGCTAGATTGCAAAGGCTTACCTGGCGATATAAAGAGagg
attgaaagaaaaaataaaatgatgttCTGCAAGATTTTAGTACTTTTTCG
attgttgttgttttcaaaTATTGCGTTTTCATGTCAGTGCTTGGCCATAT
CACTCTTGGATTGTATTTGAATGAAGTATTTCCCTTGATTGAGAGGAATT
CAGCCATTATCTTCTTCTCACTTATTTTTTTGGctcttttccagaaaaaa
ccgaCTTCCTTCTTTTTTACCAAAATAGTTTTTATACGATCCCTGTAAAG
AATTGTATttatttgtgtattttacagaaccaTATTTGTATTTTGCAGAA
CACATATCAATTAATAatacaaccccttctcacagactcggtaggatttt
tttttacCAGTGGGGGtagaaataacggactgaaactcgatggagattga
tattcccataatttttatggctggggatataaattccattgttttcaagt
caggaaattcagtggggatgggaaaaatagcataatattttccagtgagg
attttttttggttattttcagtGAGGACCAAAGCTGGAGTATAATGGGGA
CGGTGCTTTGGCttatttttccagtggaaagaggtcccagtgggtctgtg
aaaaaGGGGTGTAATAATAGTAGTTTTTAGAAAGTTTAACGAATTTTATT
TGAGAAATACCTAACCAAATATTATTaagattgtaaaatttttaatttag
aaGAAGATTTTTGTGTAGAGGGTGTATGCTAATGTTACTTATATACGATG
AATTTTGGTAATGATAAAATAATGATTTTATGTTGATATTGTATGGAATA
AAAGTCTCTTAAATGATCCCTAA
Run BLAST on NCBI

protein sequence of TCONS_00042037-protein

>TCONS_00042037-protein ID=TCONS_00042037-protein|Name=TCONS_00042037-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
LQGVSPNLAGAGSSWGLYFFSFNFCKASLKDYQQVESLSATSHLLAGTIA
GVFTLSLTNPIWVIKTRMCLQTGATSVNEVYYSGVLDGLKKLYQQEGLRG
YYRGFVPGLFGVSHGALQFMAYEELKKMRSKYTGQPAESKLNPLEYIAMA
ALSKVFAVVSTYPYQVLRSRLQDAQYLGHYNGMVDTFQKILRHEGVSGLY
KGMFMSMLRVTPACCITFLVYENVSHFLLEKN
Run BLAST on NCBI

transcript from alignment at sc0003161:7331..13694-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042037 ID=TCONS_00042037|Name=TCONS_00042037|organism=Clytia hemisphaerica|type=transcript|length=6364bp|location=Sequence derived from alignment at sc0003161:7331..13694- (Clytia hemisphaerica)
CATTACAGGGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGC
TTGTATTTCTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCA
ACAGGTGGAATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAG
CTGGTATGTGCATATATTGTTCGTCTTATCAATGTAACGACATCGATAGA
AGATATAGAGTCGATATTTTATGTGGATAGTCCAGTAGTCTAGGAATTTT
AGACAGCTTTCGATGAACGGTACATTGGATGGAGCAGGGTTTCGAATTTT
GTCTTGACAACACTCCTGCCCTTATGACGTATAGTGTAACATTTTCATCT
GGGAAATAATTATGCCGTATTTTATCATCCACTCACGGTGAAGGACTTTT
CTTCTGAAAGAGCCAAATACAGTGTTGAATAACTTTTAGTTCTGTTCTTT
CAGGCCAAGTTATGAGATTTGTAATGTCTTTTTGCCAAGGGTTTTCAATT
AAGTTCGTCTCTATAAGTTGTCTATGTTCACTTCCAATTCTATCTGAGCT
TTGTAAAAACGTTTTCCTTCTTCTTCACTTGTCCATCTTTTATTAGCTTC
TGATTTATCTCACCGATCCTTTTTGGGCTATCAAGACAAGAATTCTCATT
TACCTAATATTTGTCTCGTTTATCTTTAGGAGTGTTCACTTTATCCCTCA
CAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAGACTGGCGCA
ACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGGTAAGAAGGATTG
ACCCTACTTTCAAAGTTGTTTCAAATTAATTTTGACCAATGAGAGAGAGT
GTGTCATTCTAGAAAAATATGAAATAAAACGTTCGCTTCGCACTCCAGGA
GGGGGGCACTGGGTTTACCAACTGACGGACGGTACCAACTCTTTTAGAGC
AAAAAAATCAGGATTTTCAGGCAAATTTTTCGTAATTTTTACTGGATTTG
CTGAAATTTTCACCCTTACAGTGCATTTCTGCTATCTTGAATAACGTACC
CTTAATAAATCAATTTGCCAGACTGCAAATGGCTATGGACCCCCCCCCGG
GTTCACACTTCAGTTTTATTTTTTGCGCTCTCTAATCCAATCTTCAAGGG
GATTTGGATTTTCATTGAATAAAAAAGCGTTTCGATTAGAAGAACATCGT
ATTAGAGAGCGTCAATTATATTTAAATAGTTCGAACTAAGTTTTACTCCC
TGTTTGTAATTCGAACAAATTATTTTTCCGCCCGAGTTTGAATCAGTGTC
AAGACTCAATATACTTCACCTTAAGGACCTTACATGTGTAGTCTACTGAT
TCCTAACTACTCAGTATATACAGGAAGCGTGTCCAGTCTTAGAGCTGACT
AGTGTAGTCCGCCGTCTCTTTTTTGATTCTGTATAATCTGGTCGTCAACA
GCGCGATTCGAATGTTTCGAAATCTAAGTCGACTTCAAAACTGGACACAC
TTGTACGGGAAATCTGTAAGCAGTTAGCCTATCTAGCGTGTAAAGGGAAA
TGTTACAAGTGGTGTAAGCCAAACATGACCTAACAATCTCTCATTATTTG
TAATATCTTTTAGATGGGTTAAAGAAGTTGTATCAACAGGAAGGCTTGAG
AGGCTACTATCGCGTAAGTTGCAATCTTTTTCATTCATTTCTTAATAGTT
TTGAAAGTTGCCTTTATGAATATTCTTTCACATAAAAATAAATAGTCTAG
TGTTACTATTTTTTTTCCATTTTGCAAGGCTTTTTGTCAGTCTTCTTTCC
TAGGATATAGGGTATATTTATTCTTAATTTTCTCTAATCTGAAGGATTTT
GTACCAGTCTTCTTTTTTAGGATATAGGGTACATTTATTCTAAATTTTCT
CCACTTTGCAGGGTTTTGTACCGGGATTATTCGGAGTATCACACGGTGCT
TTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAGGAGTAAATACAC
TGGACAGCCAGCTGAATCCAAATTGGTTAGTTGTAAACTCTAGATTTTAG
TGGTTCCTGCGAAGTGCAGCATACATTCCTTATAATTTATCCCTGTCTTA
TTTCTGATATTTCTGTATAAAAGCTGGCTTTTCACCATTTTCCACAGATG
ACTTTTCCGTCCAGGTTTACTACGTATACTTGGTGTACCATTGTTTTGAT
TTAACTGCATTTGTTCTTGTTTTTGGGTTTGCCTTCTCCTGGCCATATGC
CTTAACTGTTTGTGTGGAAGTTGAAACTTTTATTAGTTATTCTAAGGTCC
CAAATAGTATGGGGGTCCGAAATTTGTTCAAAATCTATTAAACGGGTGGG
TCCGAATAAAAGGGGGTCCGAAATTGTACCTTTAAAAACCCCAAAATAAG
GTAATTGTAAGCTAAAAGCAGGCTATTCAGAGCAATTCAGCTTGTGATAG
CTAAAAATATTAAAAATAAATAAACAGGGGGTCTTAATAAGAACAGAGGG
TCCGAATTTTTTTTTGAAAATCAATAAGCGGTTAGGGACGTTTATTCGGG
ACCTTAGAGTAGTGTCTACCAAGGATAGATAAAGTATAACTTACCTTCAC
AACATCTCTTAGAATCCTCTGGAGTACATCGCCATGGCAGCTCTATCAAA
AGTCTTTGCTGTTGTCTCAACGTACCCTTATCAAGTTCTTCGATCGCGGT
TACAAGTAAGCATTCAAACCACAGATATCTTATATAAAACACTAGATAGA
GAGCCATTCTATCTTTTCCAAGCCAAGGCAGGGGAAGCAAAATAATGCGC
CATCTTTTCCCTTGAATATTTCTCTGTTAAAGTTTATTTGAGACTACAAG
ATTTCAAGTGACATTGAAGATTGATTATTTTGCTTCGAATAGGGAAGGAA
ACACTCTGTCTATTGTTTTATTTAAGATACTTCAATGGAATAAATTTTCA
CGTAGACTAAATTTCGTGTTTGAGCTCATTCGCGGACTTAATTTCGCGGA
TGGCATTATCAGGAGACGATATTTTCATGATTTTTTGTCTCTTTACTGAC
AAATTACACATACTGGTTGTTGAAATACGCATTATTAGCGCTCCTTTAAA
AGTAGTTATTTGACAATTTTTGAGTTTGGGCCAAAAAGAATTTTGCGGAT
AAGACCTTCCAAATTTCCATTGGGACTTAATTTCGCAGATGACACCAAAA
CCCGCGAAATTTAATCCCCGCAAAAATTTGTCCCATTAAAGTTTCCATCA
CAGGAGCATTTGGGAAAGCCTAGCAAAAAAAGTACAAAACTTATGATTAG
AAATAGTCGGGTTTTTTTCGTCAAAATTATTGCTGGAATCTTGAATTTTT
TCTAACCCTAAGATACTAATCAAAACAACATTTTTTGTCTTTTTCTTCAG
GATGCACAATATCTTGGTCATTATAATGGGATGGTGGACACATTCCAAAA
AATCTTAAGGTTATTTTTTTAACGTCAATCCTCTCTCTACCTAAACTCCT
TGACTGGGTCAATCAGAAATTCCCTGTTAAGGGAGTAGTCAGAAAGTATC
TACTAAGGTGGAGTGAAGGATATTTTCAAAAATTCCAAAAAAGATTCGCA
CCCCCTCCCCGCCCTCATATCCTCAAAAAAAAATCAAGCACGACTCCCCC
TAACCACCTATTATATTTTTGGCACCCCCTTCTAGTGTAGGCCACTTTAA
ATGATATGAAATTTTTTTGAGACCGAGGTCCCCTAAGGATGGTAAAAATT
TTGACACCTCCCCCCCTCCCCCCTAGTAGATGCTTTCTGGCCACTCCCTA
ATTCCGACAACTATAGGATTCAAGTGTTTCGATATTGAAACGTTCGAAAG
TGTCGTTTCTCTAATTTTACAATATTGGAATTAAAATTCCTCTTGGTCTT
ATTGCAGAGTGATTTACACTTAAAGAAATGGACGCTTTTAATTTTAAAGT
CTTAAATGTTTTCCAATTTTTTTTTCATTTCTAGACATGAAGGAGTGAGC
GGCTTATATAAAGGAATGTTTATGTCCATGCTCAGGTATTGTTCATTTTA
TCCAAAATGGCTGAGTTTGTACCACAACCTGCGTTGAAATATATTGAGAA
TTTTGGTTGGTTATTTCCTCGTTTTACGAAATGTGAAGTTCGGGTGAAAA
AGTCGCTATCTGTTAAATATAACCGAGTATTTCAATTTGGGAGGGGTTTA
TAGAATTCCAGGCTATATTCTAAGCCCTATTGGACCATTTTCGAACTCTT
GGAACCGCAGATTCTAAGGCCCTCTTATCTTAAGTCTAGCGTTAAAATTC
AGAGTTAAACTCTACCCTTCCAAACAAAGTTAGAGCGCTTCTAAGTCATT
GTGGATATAAGATTTCCTGGGAATTTCCCTTTTATCTTAAATATTACGAC
CTTGACTGTAGGTCTGAAATACAAAAAAATAAACATTCTTCTAGTTACAA
AATCCTGAAATGTAGGTAAACGTAAACTGATAGGCCATTTTTGTTCATTG
TGGGCAGAATGATTGTTCTTACTTAAGAGCTGGAAACTTGTAAGAGATCA
AAGTATCCTTAAGGTTCATATGGATAGGTATAGTTTGAGACTGTAAATGC
CCGATTTTCCCCGTATGCTTATGAAAAAAGAGTGTAACCAAATCATTTAT
ACAGTCGACGCTCTCGGATCGATTTTCGAGGAGAATTAGTTTTCTTCGAA
TAAGTGAGCTTATCGAAGGGTGGATATAGCGTTGTTTATAGGTGTTTTTT
CATTGACAATGGCTTTCAATATCATCGAATAATGTAGCGAATCAAATAGT
AGAATGTCAAATTTGAGCGTTAACCGTATTTTTATTCATCCCTGGTCATC
CCTCAACACTTTCTGTAACTTTTTCTTTCTATAGAGTGACACCTGCGTGT
TGTATCACTTTTCTGGTTTACGAAAATGTCAGCCATTTCTTGCTGGAGAA
GAATTAGATGATCGTTTTTCGAGAGCACCAGGAGTTGGAGAAAAGTAACT
TTTGGAACAGATCTCATGAACATTTGCCTAGATTATGTACTGGTTTCAAC
CAGCATTGGGATTGAGGAAGCTGACTAGATTATAAAGGCTTGCCTGGCCA
TATAGAGAGAGAATTGAGAAAAATTTACGATGAAGATTTCAGTATCTTTT
CAATTTTGTACAGTCCTTATAAACATCCGTATACTCTCTGCTCCGCCTTT
TTCGGACACGCTTGTCACAGCCAGTATCATTCGGGTAATTTTACAAGCCT
TGTTTTAAGGATATATAACCAATACTTATAAAAGTTACAGAAATTATTGT
GGAAAGGAAAAAGCTTCTGCTTATTTCAGGTGATTTGATCCAATACTTTG
GCGATGTTGGTGAAAGTCATTAAAGATTACCCAAATGATATTTCATGGAC
TGTAGCTTGCCAGTTCATGGCCGATTTTTCAGATTTATAGCATCAATAAT
CAGAGCATATAAGACATGCTCGGGTCAACCAACATTGGTGTTGAGAAAGC
CGGCTAGATTGCAAAGGCTTACCTGGCGATATAAAGAGAGGATTGAAAGA
AAAAATAAAATGATGTTCTGCAAGATTTTAGTACTTTTTCGATTGTTGTT
GTTTTCAAATATTGCGTTTTCATGTCAGTGCTTGGCCATATCACTCTTGG
ATTGTATTTGAATGAAGTATTTCCCTTGATTGAGAGGAATTCAGCCATTA
TCTTCTTCTCACTTATTTTTTTGGCTCTTTTCCAGAAAAAACCGACTTCC
TTCTTTTTTACCAAAATAGTTTTTATACGATCCCTGTAAAGAATTGTATT
TATTTGTGTATTTTACAGAACCATATTTGTATTTTGCAGAACACATATCA
ATTAATAATACAACCCCTTCTCACAGACTCGGTAGGATTTTTTTTTACCA
GTGGGGGTAGAAATAACGGACTGAAACTCGATGGAGATTGATATTCCCAT
AATTTTTATGGCTGGGGATATAAATTCCATTGTTTTCAAGTCAGGAAATT
CAGTGGGGATGGGAAAAATAGCATAATATTTTCCAGTGAGGATTTTTTTT
GGTTATTTTCAGTGAGGACCAAAGCTGGAGTATAATGGGGACGGTGCTTT
GGCTTATTTTTCCAGTGGAAAGAGGTCCCAGTGGGTCTGTGAAAAAGGGG
TGTAATAATAGTAGTTTTTAGAAAGTTTAACGAATTTTATTTGAGAAATA
CCTAACCAAATATTATTAAGATTGTAAAATTTTTAATTTAGAAGAAGATT
TTTGTGTAGAGGGTGTATGCTAATGTTACTTATATACGATGAATTTTGGT
AATGATAAAATAATGATTTTATGTTGATATTGTATGGAATAAAAGTCTCT
TAAATGATCCCTAA

Coding sequence (CDS) from alignment at sc0003161:7331..13694-

>TCONS_00042037 ID=TCONS_00042037|Name=TCONS_00042037|organism=Clytia hemisphaerica|type=CDS|length=5592bp|location=Sequence derived from alignment at sc0003161:7331..13694- (Clytia hemisphaerica)
AGTGACACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCC
ATTTCTTGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAA
AGGAATGTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAA
TGGGATGGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACAT
CGCCATGGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTT
ATCAAGTTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGA
GTATCACACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGAT
GAGGAGTAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAA
GAAGTTGTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCAC
TTTATCCCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTAC
AGACTGGCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTT
ACAGGGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGT
ATTTCTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAG
GTGGAATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGA
GTGACACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCA
TTTCTTGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAA
GGAATGTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAAT
GGGATGGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATC
GCCATGGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTA
TCAAGTTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAG
TATCACACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATG
AGGAGTAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAG
AAGTTGTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACT
TTATCCCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACA
GACTGGCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTA
CAGGGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTA
TTTCTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGG
TGGAATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGAG
TGACACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCAT
TTCTTGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAAG
GAATGTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAATG
GGATGGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATCG
CCATGGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTAT
CAAGTTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAGT
ATCACACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATGA
GGAGTAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAGA
AGTTGTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACTT
TATCCCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAG
ACTGGCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTAC
AGGGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTAT
TTCTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGGT
GGAATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGAGT
GACACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCATT
TCTTGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAAGG
AATGTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAATGG
GATGGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATCGC
CATGGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTATC
AAGTTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAGTA
TCACACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAG
GAGTAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAGAA
GTTGTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACTTT
ATCCCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAGA
CTGGCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTACA
GGGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTATT
TCTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGGTG
GAATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGAGTG
ACACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCATTT
CTTGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAAGGA
ATGTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAATGGG
ATGGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATCGCC
ATGGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTATCA
AGTTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAGTAT
CACACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAGG
AGTAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAGAAG
TTGTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACTTTA
TCCCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAGAC
TGGCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTACAG
GGTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTATTT
CTTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGGTGG
AATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGAGTGA
CACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCATTTC
TTGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAAGGAA
TGTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAATGGGA
TGGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATCGCCA
TGGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTATCAA
GTTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAGTATC
ACACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAGGA
GTAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAGAAGT
TGTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACTTTAT
CCCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAGACT
GGCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTACAGG
GTGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTATTTC
TTCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGGTGGA
ATCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGAGTGAC
ACCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCATTTCT
TGCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAAGGAAT
GTTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAATGGGAT
GGTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATCGCCAT
GGCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTATCAAG
TTCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAGTATCA
CACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAGGAG
TAAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAGAAGTT
GTATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACTTTATC
CCTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAGACTG
GCGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTACAGGG
TGTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTATTTCT
TCTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGGTGGAA
TCACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTGAGTGACA
CCTGCGTGTTGTATCACTTTTCTGGTTTACGAAAATGTCAGCCATTTCTT
GCTGGAGAAGAATTAGACATGAAGGAGTGAGCGGCTTATATAAAGGAATG
TTTATGTCCATGCTCAGGATGCACAATATCTTGGTCATTATAATGGGATG
GTGGACACATTCCAAAAAATCTTAAGAATCCTCTGGAGTACATCGCCATG
GCAGCTCTATCAAAAGTCTTTGCTGTTGTCTCAACGTACCCTTATCAAGT
TCTTCGATCGCGGTTACAAGGTTTTGTACCGGGATTATTCGGAGTATCAC
ACGGTGCTTTACAATTCATGGCTTATGAAGAACTGAAGAAGATGAGGAGT
AAATACACTGGACAGCCAGCTGAATCCAAATTGATGGGTTAAAGAAGTTG
TATCAACAGGAAGGCTTGAGAGGCTACTATCGCGAGTGTTCACTTTATCC
CTCACAAATCCCATATGGGTAATCAAGACAAGAATGTGTTTACAGACTGG
CGCAACGAGCGTCAATGAAGTTTATTATTCAGGTGTTTTAGTTACAGGGT
GTGTCACCAAACCTTGCAGGTGCTGGTTCATCATGGGGCTTGTATTTCTT
CTCCTTCAATTTTTGTAAAGCCTCCCTCAAAGATTACCAACAGGTGGAAT
CACTGTCAGCTACGAGTCATTTACTTGCAGGAACTATAGCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025924XLOC_025924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042037-exon-sc0003161-1575043694:13542..13694TCONS_00042037-exon-sc0003161-1575043694:13542..13694Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:12908..13015TCONS_00042037-exon-sc0003161-1575043694:12908..13015Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:12032..12081TCONS_00042037-exon-sc0003161-1575043694:12032..12081Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:11670..11783TCONS_00042037-exon-sc0003161-1575043694:11670..11783Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:10990..11082TCONS_00042037-exon-sc0003161-1575043694:10990..11082Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:10236..10294TCONS_00042037-exon-sc0003161-1575043694:10236..10294Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:9660..9710TCONS_00042037-exon-sc0003161-1575043694:9660..9710Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:8701..8810TCONS_00042037-exon-sc0003161-1575043694:8701..8810Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1575043694:7331..8365TCONS_00042037-exon-sc0003161-1575043694:7331..8365Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:13542..13694TCONS_00042037-exon-sc0003161-1510915933:13542..13694Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:12908..13015TCONS_00042037-exon-sc0003161-1510915933:12908..13015Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:12032..12081TCONS_00042037-exon-sc0003161-1510915933:12032..12081Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:11670..11783TCONS_00042037-exon-sc0003161-1510915933:11670..11783Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:10990..11082TCONS_00042037-exon-sc0003161-1510915933:10990..11082Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:10236..10294TCONS_00042037-exon-sc0003161-1510915933:10236..10294Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:9660..9710TCONS_00042037-exon-sc0003161-1510915933:9660..9710Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:8701..8810TCONS_00042037-exon-sc0003161-1510915933:8701..8810Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1510915933:7331..8365TCONS_00042037-exon-sc0003161-1510915933:7331..8365Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:13542..13694TCONS_00042037-exon-sc0003161-1491911889:13542..13694Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:12908..13015TCONS_00042037-exon-sc0003161-1491911889:12908..13015Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:12032..12081TCONS_00042037-exon-sc0003161-1491911889:12032..12081Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:11670..11783TCONS_00042037-exon-sc0003161-1491911889:11670..11783Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:10990..11082TCONS_00042037-exon-sc0003161-1491911889:10990..11082Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:10236..10294TCONS_00042037-exon-sc0003161-1491911889:10236..10294Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:9660..9710TCONS_00042037-exon-sc0003161-1491911889:9660..9710Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:8701..8810TCONS_00042037-exon-sc0003161-1491911889:8701..8810Clytia hemisphaericaexon
TCONS_00042037-exon-sc0003161-1491911889:7331..8365TCONS_00042037-exon-sc0003161-1491911889:7331..8365Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042037-proteinTCONS_00042037-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003161supercontigsc0003161:7331..13694 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.44947	0	0	0	0	0.239823	0	0	0	0	0	0	0	0	0	0	0.526327	0	0.000210737	0	0	0.000210569	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR018108Mitochondrial_sb/sol_carrier
IPR023395Mt_carrier_dom
Blast
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BLAST of TCONS_00042037 vs. Swiss-Prot (Human)
Match: MFTC (Mitochondrial folate transporter/carrier OS=Homo sapiens GN=SLC25A32 PE=1 SV=2)

HSP 1 Score: 254.988 bits (650), Expect = 7.345e-79
Identity = 129/231 (55.84%), Postives = 168/231 (72.73%), Query Frame = 3 
Query:    6 QGVSPNLAGAGSSWGLYFFSFNFCKASLKDYQQVESLSATSHLLAGTIAGVFTLSLTNPIWVIKTRMCLQTGATSVNEVY--YSGVLDGLKKLYQQEGLRGYYRGFVPGLFGVSHGALQFMAYEELKKMRSKYTGQPAESKLNPLEYIAMAALSKVFAVVSTYPYQVLRSRLQDAQYLGHYNGMVDTFQKILRHEGVSGLYKGMFMSMLRVTPACCITFLVYENVSHFLLE 692
            QGV+PN+ GAG SWGLYFF +N  K S K   + E L AT +L++   AG  TL +TNP+WV KTR+ LQ  A  VN  +  Y G+ D L K+Y+ EG+RG Y+GFVPGLFG SHGALQFMAYE LK   +++  +  E++L+ +EYI++AALSK+FAV +TYPYQV+R+RLQD      Y+G++D   K  R EGV G YKG+  +++RVTPACCITF+VYENVSHFLL+
Sbjct:   83 QGVTPNIWGAGLSWGLYFFFYNAIK-SYKTEGRAERLEATEYLVSAAEAGAMTLCITNPLWVTKTRLMLQYDAV-VNSPHRQYKGMFDTLVKIYKYEGVRGLYKGFVPGLFGTSHGALQFMAYELLKLKYNQHINRLPEAQLSTVEYISVAALSKIFAVAATYPYQVVRARLQDQHMF--YSGVIDVITKTWRKEGVGGFYKGIAPNLIRVTPACCITFVVYENVSHFLLD 309
The following BLAST results are available for this feature:
BLAST of TCONS_00042037 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFTC7.345e-7955.84Mitochondrial folate transporter/carrier OS=Homo s... [more]
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