TCONS_00042036 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042036
Unique NameTCONS_00042036
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length665

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042036 ID=TCONS_00042036|Name=TCONS_00042036|organism=Clytia hemisphaerica|type=transcript|length=665bp
GCTGAGAGAAGTATCCAATTGGAAGAAATACCTGGACTTTTGACAATCAA
AAAGATAAAGCCAAACCAAGAAAAGAAGGCGACCACTACTAGGGTGACTC
AGGTACATGGTTCAATGCGAGCTAAAGATGTAGCATCGAAAGTCAAAGAA
ATCAAGGAAGAGAAACAGAAGAAGcaaactgaaaaagaagaagcaaAGAA
AAGAAGAGAGGATATCAAAGAAACATTCTTCAAATGCAAAACTGAATGTA
CATGTATGCAACGAAAATGCTTGGCTTCAGGATTAAAGCAGTGTCCTGTG
TGTCTCAATGTTCTTCGTTCAGTTTGTAGCAAAgcaagttgtaaaattaa
tggGATTAAACCATTGATGATAATGCCAGCCAAACAGCATTCTATATCTA
AACGATTGTTTGAAGAGGATTCATCTGATGATCAAGATCAGGAATTTGAA
TCTGATGAAAGTGAAATATCTGATGTAGATGAAACTGATGGTGACGATGA
AAGAAGCATCTAGAAACTCAAGGATTGCTGGAAAGGCCTGGCAccaccaa
aaaaagaaaatgaagtcaTCGGTAGATGGTATGCTGCAATCTTCGCTACA
AAGAAAACCAAAAGGTTATATATTGGTCGGTTGTTGAGGAGGTTCCTTAA
AGATGAAGATGGTGC
Run BLAST on NCBI

protein sequence of TCONS_00042036-protein

>TCONS_00042036-protein ID=TCONS_00042036-protein|Name=TCONS_00042036-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
AERSIQLEEIPGLLTIKKIKPNQEKKATTTRVTQVHGSMRAKDVASKVKE
IKEEKQKKQTEKEEAKKRREDIKETFFKCKTECTCMQRKCLASGLKQCPV
CLNVLRSVCSKASCKINGIKPLMIMPAKQHSISKRLFEEDSSDDQDQEFE
SDESEISDVDETDGDDERSI
Run BLAST on NCBI

transcript from alignment at sc0003160:12999..13663

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042036 ID=TCONS_00042036|Name=TCONS_00042036|organism=Clytia hemisphaerica|type=transcript|length=665bp|location=Sequence derived from alignment at sc0003160:12999..13663 (Clytia hemisphaerica)
GCACCATCTTCATCTTTAAGGAACCTCCTCAACAACCGACCAATATATAA
CCTTTTGGTTTTCTTTGTAGCGAAGATTGCAGCATACCATCTACCGAtga
cttcattttctttttttggtggTGCCAGGCCTTTCCAGCAATCCTTGAGT
TTCTAGATGCTTCTTTCATCGTCACCATCAGTTTCATCTACATCAGATAT
TTCACTTTCATCAGATTCAAATTCCTGATCTTGATCATCAGATGAATCCT
CTTCAAACAATCGTTTAGATATAGAATGCTGTTTGGCTGGCATTATCATC
AATGGTTTAATCccattaattttacaacttgcTTTGCTACAAACTGAACG
AAGAACATTGAGACACACAGGACACTGCTTTAATCCTGAAGCCAAGCATT
TTCGTTGCATACATGTACATTCAGTTTTGCATTTGAAGAATGTTTCTTTG
ATATCCTCTCTTCTTTTCTttgcttcttctttttcagtttgCTTCTTCTG
TTTCTCTTCCTTGATTTCTTTGACTTTCGATGCTACATCTTTAGCTCGCA
TTGAACCATGTACCTGAGTCACCCTAGTAGTGGTCGCCTTCTTTTCTTGG
TTTGGCTTTATCTTTTTGATTGTCAAAAGTCCAGGTATTTCTTCCAATTG
GATACTTCTCTCAGC

Coding sequence (CDS) from alignment at sc0003160:12999..13663

>TCONS_00042036 ID=TCONS_00042036|Name=TCONS_00042036|organism=Clytia hemisphaerica|type=CDS|length=513bp|location=Sequence derived from alignment at sc0003160:12999..13663 (Clytia hemisphaerica)
CTAGATGCTTCTTTCATCGTCACCATCAGTTTCATCTACATCAGATATTT
CACTTTCATCAGATTCAAATTCCTGATCTTGATCATCAGATGAATCCTCT
TCAAACAATCGTTTAGATATAGAATGCTGTTTGGCTGGCATTATCATCAA
TGGTTTAATCccattaattttacaacttgcTTTGCTACAAACTGAACGAA
GAACATTGAGACACACAGGACACTGCTTTAATCCTGAAGCCAAGCATTTT
CGTTGCATACATGTACATTCAGTTTTGCATTTGAAGAATGTTTCTTTGAT
ATCCTCTCTTCTTTTCTttgcttcttctttttcagtttgCTTCTTCTGTT
TCTCTTCCTTGATTTCTTTGACTTTCGATGCTACATCTTTAGCTCGCATT
GAACCATGTACCTGAGTCACCCTAGTAGTGGTCGCCTTCTTTTCTTGGTT
TGGCTTTATCTTTTTGATTGTCAAAAGTCCAGGTATTTCTTCCAATTGGA
TACTTCTCTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025923XLOC_025923Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042036-exon-sc0003160-1491911889:12999..13663TCONS_00042036-exon-sc0003160-1491911889:12999..13663Clytia hemisphaericaexon
TCONS_00042036-exon-sc0003160-1510915933:12999..13663TCONS_00042036-exon-sc0003160-1510915933:12999..13663Clytia hemisphaericaexon
TCONS_00042036-exon-sc0003160-1575043694:12999..13663TCONS_00042036-exon-sc0003160-1575043694:12999..13663Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042036-proteinTCONS_00042036-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003160supercontigsc0003160:12999..13663 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.434493	0.202196	0.725233	0	0.279618	0.357308	0.914212	0.617231	0.341561	0.316849	0.788239	0.277826	0.684186	0	0.351367	0.343024	0.663109	0.331792	1.11233	0.424014	0.284881	0.529389	0.199072	0.130016	0.16889	0.208208	0.106682	0.341562	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042036 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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