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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042032 ID=TCONS_00042032|Name=TCONS_00042032|organism=Clytia hemisphaerica|type=transcript|length=1343bp
tctctagaTATCAAATACtgtaaaaaatacataaaaaatcaaaatatcaa
aaatttgaacgtaaaaaaatcaaatattaaGTCAAAAAAGATTGTTTATC
GTAGTCAGAGCAAATATACAGTTTCTATACGTCGTTGGTACTGATGATTA
TATGGGTGGAAAGCTTGACGATTCAAGCCATTACCACGGCCACGACCACC
ACCACGATTTGCTTGACCACGGCCTCTACCACGATTTGCTTGACCACGAT
TTGCTTGACCACGACCTCGATCACGATTTGCTTGACCACGACCTCGACCA
AGATTTGCTTGACCTCTACCTCGACCATGGCCATGACCGTGATTTGCAGC
ATGACCACCCTGAATTGCAGCATGACCACCCTGATTTGCAGCATGACCAC
CTAGAATATCTGCATCTACCTGTTCATCTTCATTCATTAATACTGGCATA
TCTGGAATATCTTCCTGTTCATCTAACAACACTGGAATATGAATATCAAT
GTCTTCTATATCTGCTTCATTCTCATTCAAAACTAGCTCAATTTCTTCCT
CAATTTCCTCTGTATCTTCAACCAAAACCACCTGCTCGGCGGTGACTCCA
CCTTCATCATGAAGACCCTAATAAAAGAAATTAACTCGTAATGCTATCGG
AACTCACTGAAAGTTAGCCCTTAGATTGAAGTAAACTCTATAAGCTTGTA
GAAAAGCTGACACTAACTTATGAAATGAACTTCAAAGACAAACAAAGTAA
TAATATCCTAACAATGTTAATGAAACTCTTACATAAGCAACAGTGGAAGC
AGTCGAGACAGGAGCAGGTGGTGATGCCAAATTGATGTCTTCAAATTCAA
ATGGATccatttttatttagttttgctAAAACACGGCGATTTGACTTTGG
AACTATCAATCTCGGAAGAAGCGAAAAAATATAGTGTTCGGCAAAGTAAA
CACCACGGAAATTttataattacgtcattttttaaccgGCGGGAAAGCAA
AGAACCTTCGAGAAATCTTACAAAAGGTAAACAAAATGGCGGGCATCAAC
TACCACAACTTTTTCCAAAGAGCTCTTCTTCATCATAAATACCATGTTCA
TCAAAAGCTTCGAGACAATAACATTGCACGAACCAACTATGTAAACCCTC
ATTATAAAACTTTAACATTTTCTACTGCAAAAGAGGTATACGACACTCTT
TATTCCTCCAAACTTTCTCTGTTACAGACACTGAAGGGAATGGTTTCTGT
TTTTCCTTGCGATTCTATCCTTAGAATTAATTCAAATGGGGATGCAAATC
TCATTTGCCCATTCCTCAAACTTTCTGAGCATATGagtatcaa Run BLAST on NCBI protein sequence of TCONS_00042032-protein >TCONS_00042032-protein ID=TCONS_00042032-protein|Name=TCONS_00042032-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MAGINYHNFFQRALLHHKYHVHQKLRDNNIARTNYVNPHYKTLTFSTAKE
VYDTLYSSKLSLLQTLKGMVSVFPCDSILRINSNGDANLICPFLKLSEHM
SI Run BLAST on NCBI transcript from alignment at sc0003160:3491..4833 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042032 ID=TCONS_00042032|Name=TCONS_00042032|organism=Clytia hemisphaerica|type=transcript|length=1343bp|location=Sequence derived from alignment at sc0003160:3491..4833 (Clytia hemisphaerica)
ttgatactCATATGCTCAGAAAGTTTGAGGAATGGGCAAATGAGATTTGC
ATCCCCATTTGAATTAATTCTAAGGATAGAATCGCAAGGAAAAACAGAAA
CCATTCCCTTCAGTGTCTGTAACAGAGAAAGTTTGGAGGAATAAAGAGTG
TCGTATACCTCTTTTGCAGTAGAAAATGTTAAAGTTTTATAATGAGGGTT
TACATAGTTGGTTCGTGCAATGTTATTGTCTCGAAGCTTTTGATGAACAT
GGTATTTATGATGAAGAAGAGCTCTTTGGAAAAAGTTGTGGTAGTTGATG
CCCGCCATTTTGTTTACCTTTTGTAAGATTTCTCGAAGGTTCTTTGCTTT
CCCGCcggttaaaaaatgacgtaattataaAATTTCCGTGGTGTTTACTT
TGCCGAACACTATATTTTTTCGCTTCTTCCGAGATTGATAGTTCCAAAGT
CAAATCGCCGTGTTTTagcaaaactaaataaaaatggATCCATTTGAATT
TGAAGACATCAATTTGGCATCACCACCTGCTCCTGTCTCGACTGCTTCCA
CTGTTGCTTATGTAAGAGTTTCATTAACATTGTTAGGATATTATTACTTT
GTTTGTCTTTGAAGTTCATTTCATAAGTTAGTGTCAGCTTTTCTACAAGC
TTATAGAGTTTACTTCAATCTAAGGGCTAACTTTCAGTGAGTTCCGATAG
CATTACGAGTTAATTTCTTTTATTAGGGTCTTCATGATGAAGGTGGAGTC
ACCGCCGAGCAGGTGGTTTTGGTTGAAGATACAGAGGAAATTGAGGAAGA
AATTGAGCTAGTTTTGAATGAGAATGAAGCAGATATAGAAGACATTGATA
TTCATATTCCAGTGTTGTTAGATGAACAGGAAGATATTCCAGATATGCCA
GTATTAATGAATGAAGATGAACAGGTAGATGCAGATATTCTAGGTGGTCA
TGCTGCAAATCAGGGTGGTCATGCTGCAATTCAGGGTGGTCATGCTGCAA
ATCACGGTCATGGCCATGGTCGAGGTAGAGGTCAAGCAAATCTTGGTCGA
GGTCGTGGTCAAGCAAATCGTGATCGAGGTCGTGGTCAAGCAAATCGTGG
TCAAGCAAATCGTGGTAGAGGCCGTGGTCAAGCAAATCGTGGTGGTGGTC
GTGGCCGTGGTAATGGCTTGAATCGTCAAGCTTTCCACCCATATAATCAT
CAGTACCAACGACGTATAGAAACTGTATATTTGCTCTGACTACGATAAAC
AATCTTTTTTGACttaatatttgatttttttacgttcaaatttttgatat
tttgattttttatgtattttttacaGTATTTGATAtctagaga Coding sequence (CDS) from alignment at sc0003160:3491..4833 >TCONS_00042032 ID=TCONS_00042032|Name=TCONS_00042032|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0003160:3491..4833 (Clytia hemisphaerica)
gatactCATATGCTCAGAAAGTTTGAGGAATGGGCAAATGAGATTTGCAT
CCCCATTTGAATTAATTCTAAGGATAGAATCGCAAGGAAAAACAGAAACC
ATTCCCTTCAGTGTCTGTAACAGAGAAAGTTTGGAGGAATAAAGAGTGTC
GTATACCTCTTTTGCAGTAGAAAATGTTAAAGTTTTATAATGAGGGTTTA
CATAGTTGGTTCGTGCAATGTTATTGTCTCGAAGCTTTTGATGAACATGG
TATTTATGATGAAGAAGAGCTCTTTGGAAAAAGTTGTGGTAGTTGATGCC
CGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042032-exon-sc0003160-1491911889:3491..4833 | TCONS_00042032-exon-sc0003160-1491911889:3491..4833 | Clytia hemisphaerica | exon |
| TCONS_00042032-exon-sc0003160-1510915933:3491..4833 | TCONS_00042032-exon-sc0003160-1510915933:3491..4833 | Clytia hemisphaerica | exon |
| TCONS_00042032-exon-sc0003160-1575043694:3491..4833 | TCONS_00042032-exon-sc0003160-1575043694:3491..4833 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003160 | supercontig | sc0003160:3491..4833 . |
Blast
The following BLAST results are available for this feature:
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