TCONS_00042029 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042029
Unique NameTCONS_00042029
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length254

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042029 ID=TCONS_00042029|Name=TCONS_00042029|organism=Clytia hemisphaerica|type=transcript|length=254bp
GCAAAACCACCAAACCGACACGGTGTAGAACCAATAAAGTTCCTTCAAAA
TGAAATTCGTCTGACAAAGGACAACAGAGTAGGCTATATACAACGGCTTT
CGACAGAATGGAAAATCTCCTTCAAACTCAAATACGTTGCCAACAACCCT
CCATCGTATGGTACAAACACTCTCTTCTTGAAAGGGACGTTCAACTATCC
CGCAATACAGGGATACGCTGGTACATCCAAGCTTGATATCACACACAGAA
TCTC
Run BLAST on NCBI

transcript from alignment at sc0003156:1..908-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042029 ID=TCONS_00042029|Name=TCONS_00042029|organism=Clytia hemisphaerica|type=transcript|length=908bp|location=Sequence derived from alignment at sc0003156:1..908- (Clytia hemisphaerica)
GCAAAACCACCAAACCGACACGGTGTAGAACCAATAAAGTTCCTTCAAAA
TGGTAAGTTTTTCTAAGAAAAAGTTGAATCGCTCAGTCGATTATACGTTC
CACATTTACCGGATGCTTTCAAAAAGGTACACTATGACCGGTTGGTCAGG
GCTATTCTGAGAAATATTGCCCAAGTTCAAGTAACGCCCGAGCTTGCGAG
GCCGTTGCGTTAAAACTTTTTTTTCCTAACGACGGGCAAATCTGTACAGC
GTAGGCTCGTCGTTATGCGAAAAAAAACCAATTGCATTGTGCAAAAAGCC
GTGTTGTCCGCTTCGAGAAAGTAACCGGTTAACAATGAAAGATACAGTAA
TTTGAACAAAGTGATGAAAAATATATCGTCTCATTTACACTGTTAAGGTA
ATTTTCCATATAAGAATCTCATATACCTATTCATAAAAACCAAACCCCGA
AAAGAAAAAGTTGAAAGTTTGCACAAGTAAGTTTTTCCAGATATTCAAAC
ACCCGGTTATTCGAAGTAAATTCTTCCCCCTCCTCCTTTGAACTTAAAGA
AACGGGAGTCGGTTGTACCTTTATACAATCATCCGTCTATTTTCATTTGG
ATAACGGTTAGCAACTTTTGCATTATCAAAAACAACGAAACAACGTGTTA
AACAACTCTAGGTAAAAAGACATTATTAAAATGGATGTTGCCTTTTCATT
TTCCAGAAATTCGTCTGACAAAGGACAACAGAGTAGGCTATATACAACGG
CTTTCGACAGAATGGAAAATCTCCTTCAAACTCAAATACGTTGCCAACAA
CCCTCCATCGTATGGTACAAACACTCTCTTCTTGAAAGGGACGTTCAACT
ATCCCGCAATACAGGGATACGCTGGTACATCCAAGCTTGATATCACACAC
AGAATCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025916XLOC_025916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042029-exon-sc0003156-1575043694:857..908TCONS_00042029-exon-sc0003156-1575043694:857..908Clytia hemisphaericaexon
TCONS_00042029-exon-sc0003156-1575043694:1..202TCONS_00042029-exon-sc0003156-1575043694:1..202Clytia hemisphaericaexon
TCONS_00042029-exon-sc0003156-1510915933:857..908TCONS_00042029-exon-sc0003156-1510915933:857..908Clytia hemisphaericaexon
TCONS_00042029-exon-sc0003156-1510915933:1..202TCONS_00042029-exon-sc0003156-1510915933:1..202Clytia hemisphaericaexon
TCONS_00042029-exon-sc0003156-1491911889:857..908TCONS_00042029-exon-sc0003156-1491911889:857..908Clytia hemisphaericaexon
TCONS_00042029-exon-sc0003156-1491911889:1..202TCONS_00042029-exon-sc0003156-1491911889:1..202Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003156supercontigsc0003156:1..908 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.90966	0	3.03343	1.50296	0	0	6.762	2.43891	0	0	0	0.553956	13.1342	12.2639	0	0	0	0	0	0.535143	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042029 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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