TCONS_00042018 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042018
Unique NameTCONS_00042018
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042018 ID=TCONS_00042018|Name=TCONS_00042018|organism=Clytia hemisphaerica|type=transcript|length=305bp
TAAGTCGTTTAATTTAGTTGATATGAAGTGGACATCACACGGATCTTgtt
catttcaaattgatgaaaAGATTCTTGGTACTGGTGGATTTAGGAACGCG
TACTCAGCAACAAGTCAAAATGGTATGTTTAAGAACAAAACGTGGGTGCT
TAAGCGCTATAAAACTGAAGCTGAACAAAGTGTGGCTGAAAGGCAGCAAA
GTCTTGAGGACCACACCAAAACAAGTGTTCAAATGGTCGCTTTATCGAAC
TACTTCTCCTCCAAACTAAAAGAACTAAATGACAATCTTCCCAAATTTAC
GTATG
Run BLAST on NCBI

protein sequence of TCONS_00042018-protein

>TCONS_00042018-protein ID=TCONS_00042018-protein|Name=TCONS_00042018-protein|organism=Clytia hemisphaerica|type=polypeptide|length=101bp
KSFNLVDMKWTSHGSCSFQIDEKILGTGGFRNAYSATSQNGMFKNKTWVL
KRYKTEAEQSVAERQQSLEDHTKTSVQMVALSNYFSSKLKELNDNLPKFT
Y
Run BLAST on NCBI

transcript from alignment at sc0003148:13358..13662

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042018 ID=TCONS_00042018|Name=TCONS_00042018|organism=Clytia hemisphaerica|type=transcript|length=305bp|location=Sequence derived from alignment at sc0003148:13358..13662 (Clytia hemisphaerica)
CATACGTAAATTTGGGAAGATTGTCATTTAGTTCTTTTAGTTTGGAGGAG
AAGTAGTTCGATAAAGCGACCATTTGAACACTTGTTTTGGTGTGGTCCTC
AAGACTTTGCTGCCTTTCAGCCACACTTTGTTCAGCTTCAGTTTTATAGC
GCTTAAGCACCCACGTTTTGTTCTTAAACATACCATTTTGACTTGTTGCT
GAGTACGCGTTCCTAAATCCACCAGTACCAAGAATCTtttcatcaatttg
aaatgaacAAGATCCGTGTGATGTCCACTTCATATCAACTAAATTAAACG
ACTTA

Coding sequence (CDS) from alignment at sc0003148:13358..13662

>TCONS_00042018 ID=TCONS_00042018|Name=TCONS_00042018|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at sc0003148:13358..13662 (Clytia hemisphaerica)
ATACGTAAATTTGGGAAGATTGTCATTTAGTTCTTTTAGTTTGGAGGAGA
AGTAGTTCGATAAAGCGACCATTTGAACACTTGTTTTGGTGTGGTCCTCA
AGACTTTGCTGCCTTTCAGCCACACTTTGTTCAGCTTCAGTTTTATAGCG
CTTAAGCACCCACGTTTTGTTCTTAAACATACCATTTTGACTTGTTGCTG
AGTACGCGTTCCTAAATCCACCAGTACCAAGAATCTtttcatcaatttga
aatgaacAAGATCCGTGTGATGTCCACTTCATATCAACTAAATTAAACGA
CTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025905XLOC_025905Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042018-proteinTCONS_00042018-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042018-exon-sc0003148-1491911889:13358..13662TCONS_00042018-exon-sc0003148-1491911889:13358..13662Clytia hemisphaericaexon
TCONS_00042018-exon-sc0003148-1510915933:13358..13662TCONS_00042018-exon-sc0003148-1510915933:13358..13662Clytia hemisphaericaexon
TCONS_00042018-exon-sc0003148-1575043694:13358..13662TCONS_00042018-exon-sc0003148-1575043694:13358..13662Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003148supercontigsc0003148:13358..13662 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.10781	0.360096	0.418106	1.22715	9.95961	3.93511	1.42426	2.2223	0	1.15633	2.99296	2.21338	0.24559	0	0	0	0	0	0	0	0.357031	1.04488	0	0.38493	0	0.353839	0.506342	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042018 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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