TCONS_00042015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042015
Unique NameTCONS_00042015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length560

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042015 ID=TCONS_00042015|Name=TCONS_00042015|organism=Clytia hemisphaerica|type=transcript|length=560bp
NTTAAAGCCTATAACCGCGGACGGTTGTGAAGACCGCAACGAGAGCCGGA
GGCGTGACGTGGGTCTGAGCCTGATCTGATCTGATGTAATAGAGCTAGAT
GGGGTTTACGTAGTAACCCGCACCCCCCCCCTTTAAACTGTAAGTGCTAA
AGGTTCTAGCCCTCAAACTGTAGGTACTAAAAAGTTCTAGCCCTCAAACT
ATAAGTACTAAAAAGTTCTAGCCCTTAAACTGTAAGTACTAAAAAGTCCT
AGCctagaaataaaaaacttaAGCCTTACAACAAGAGCCGGAGCTGTGAT
ATGTTGTTTAACCCCAAAGAGTGCAACGAGAGCCGGAAGCCGTGACGCTG
TTCTAAGAGGagtaatcaaagaaaaaagataaaaaaaatagaaaccttAG
CCTAGAACGAGAGCCGGAGCCTCCCGTGCGACGTTGTGAAAAATAGAAAC
CTTAGCCTATGACGAGAGCCGGAGCCTCCCGTGTGACGTTGCTGAAagga
gtaaaagaaaaaaagaacaaaagccTACAACAAGAGCCGGAGCTGTGATA
TGTTGTTTAT
Run BLAST on NCBI

transcript from alignment at sc0003147:3978..4599+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042015 ID=TCONS_00042015|Name=TCONS_00042015|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0003147:3978..4599+ (Clytia hemisphaerica)
NTTAAAGCCTATAACCGCGGACGGTTGTGAAGACCGCAACGAGAGCCGGA
GGCGTGACGTGGGTCTGAGCCTGATCTGATCTGATGTAATAGAGCTAGAT
GGGGTTTACGTAGTAACCCGCACCCCCCCCCTTTAAACTGTAAGTGCTAA
AGGTTCTAGCCCTCAAACTGTAGGTACTAAAAAGTTCTAGCCCTCAAACT
ATAAGTACTAAAAAGTTCTAGCCCTTAAACTGTAAGTACTAAAAAGTTCT
AGCCTTTAAATTGTAAGTACTAAAAAGTACTAGCCCTTACATTGTAAGTA
CTAAAAGGTCCTAGCctagaaataaaaaacttaAGCCTTACAACAAGAGC
CGGAGCTGTGATATGTTGTTTAACCCCAAAGAGTGCAACGAGAGCCGGAA
GCCGTGACGCTGTTCTAAGAGGagtaatcaaagaaaaaagataaaaaaaa
tagaaaccttAGCCTAGAACGAGAGCCGGAGCCTCCCGTGCGACGTTGTG
AAAAATAGAAACCTTAGCCTATGACGAGAGCCGGAGCCTCCCGTGTGACG
TTGCTGAAaggagtaaaagaaaaaaagaacaaaagccTACAACAAGAGCC
GGAGCTGTGATATGTTGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025902XLOC_025902Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042015-exon-sc0003147-1491911889:3978..4222TCONS_00042015-exon-sc0003147-1491911889:3978..4222Clytia hemisphaericaexon
TCONS_00042015-exon-sc0003147-1510915933:3978..4222TCONS_00042015-exon-sc0003147-1510915933:3978..4222Clytia hemisphaericaexon
TCONS_00042015-exon-sc0003147-1575043694:3978..4222TCONS_00042015-exon-sc0003147-1575043694:3978..4222Clytia hemisphaericaexon
TCONS_00042015-exon-sc0003147-1491911889:4285..4599TCONS_00042015-exon-sc0003147-1491911889:4285..4599Clytia hemisphaericaexon
TCONS_00042015-exon-sc0003147-1510915933:4285..4599TCONS_00042015-exon-sc0003147-1510915933:4285..4599Clytia hemisphaericaexon
TCONS_00042015-exon-sc0003147-1575043694:4285..4599TCONS_00042015-exon-sc0003147-1575043694:4285..4599Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003147supercontigsc0003147:3978..4599 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.15599	9.28478	8.3422	6.33986	8.33969	4.03403	11.6965	21.2471	10.7818	12.4096	15.2521	9.86052	8.23464	7.33043	6.27438	6.32112	12.0093	8.61639	3.30396	3.55551	16.5308	23.9182	5.56072	6.56852	5.45229	10.093	7.71459	15.3783	14.7751	13.3369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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