TCONS_00042014 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042014
Unique NameTCONS_00042014
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042014 ID=TCONS_00042014|Name=TCONS_00042014|organism=Clytia hemisphaerica|type=transcript|length=405bp
CTTCAACGATGAGACATTCTTTGTACCTTCTTGCTAACCGTGATCTTCTT
GAAGCTTCGTTGTTTTTGCGACGTCGTTCGAAATATTCGGGATCCTCGTG
ANtctgtttttcttctttcagtTTTTGAATCTGTTCTTTGAGCTCTTCgt
tttctttcttcaatttttccaTCTCTTCAACGATGAGACATTCTTTGTAC
CTTCTTGCTAACCGTGATCTTCTTGAAGCTTCGTTGTTTTTGCGACGTCG
TTCGAAATATTCGGGGTCCTCGTGTGCTTGCGTGTTGGTGTAGCGATGAC
GACGCATGGAGGGCTTGGAAACGAGAGGTTTGGGGTTGAATTTGTACAAA
CGTTTGACTTTCTTGGTCTCGTGGTCGTCGTCTGAAGTATCGCTTTGTGA
GAAAG
Run BLAST on NCBI

protein sequence of TCONS_00042014-protein

>TCONS_00042014-protein ID=TCONS_00042014-protein|Name=TCONS_00042014-protein|organism=Clytia hemisphaerica|type=polypeptide|length=134bp
FSQSDTSDDDHETKKVKRLYKFNPKPLVSKPSMRRHRYTNTQAHEDPEYF
ERRRKNNEASRRSRLARRYKECLIVEEMEKLKKENEELKEQIQKLKEEKQ
XHEDPEYFERRRKNNEASRRSRLARRYKECLIVE
Run BLAST on NCBI

transcript from alignment at sc0003146:4666..5070

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042014 ID=TCONS_00042014|Name=TCONS_00042014|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at sc0003146:4666..5070 (Clytia hemisphaerica)
CTTTCTCACAAAGCGATACTTCAGACGACGACCACGAGACCAAGAAAGTC
AAACGTTTGTACAAATTCAACCCCAAACCTCTCGTTTCCAAGCCCTCCAT
GCGTCGTCATCGCTACACCAACACGCAAGCACACGAGGACCCCGAATATT
TCGAACGACGTCGCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCA
AGAAGGTACAAAGAATGTCTCATCGTTGAAGAGAtggaaaaattgaagaa
agaaaacGAAGAGCTCAAAGAACAGATTCAAAAactgaaagaagaaaaac
agaNTCACGAGGATCCCGAATATTTCGAACGACGTCGCAAAAACAACGAA
GCTTCAAGAAGATCACGGTTAGCAAGAAGGTACAAAGAATGTCTCATCGT
TGAAG

Coding sequence (CDS) from alignment at sc0003146:4666..5070

>TCONS_00042014 ID=TCONS_00042014|Name=TCONS_00042014|organism=Clytia hemisphaerica|type=CDS|length=402bp|location=Sequence derived from alignment at sc0003146:4666..5070 (Clytia hemisphaerica)
TTCTCACAAAGCGATACTTCAGACGACGACCACGAGACCAAGAAAGTCAA
ACGTTTGTACAAATTCAACCCCAAACCTCTCGTTTCCAAGCCCTCCATGC
GTCGTCATCGCTACACCAACACGCAAGCACACGAGGACCCCGAATATTTC
GAACGACGTCGCAAAAACAACGAAGCTTCAAGAAGATCACGGTTAGCAAG
AAGGTACAAAGAATGTCTCATCGTTGAAGAGAtggaaaaattgaagaaag
aaaacGAAGAGCTCAAAGAACAGATTCAAAAactgaaagaagaaaaacag
aNTCACGAGGATCCCGAATATTTCGAACGACGTCGCAAAAACAACGAAGC
TTCAAGAAGATCACGGTTAGCAAGAAGGTACAAAGAATGTCTCATCGTTG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025901XLOC_025901Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042014-proteinTCONS_00042014-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042014-exon-sc0003146-1491911889:4666..5070TCONS_00042014-exon-sc0003146-1491911889:4666..5070Clytia hemisphaericaexon
TCONS_00042014-exon-sc0003146-1510915933:4666..5070TCONS_00042014-exon-sc0003146-1510915933:4666..5070Clytia hemisphaericaexon
TCONS_00042014-exon-sc0003146-1575043694:4666..5070TCONS_00042014-exon-sc0003146-1575043694:4666..5070Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003146supercontigsc0003146:4666..5070 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.129292	0	0.271114	0	0	0	0	0	0	0.247939	0	0.576563	0.351291	0	0	0.181528	0	1.18824	0	0	0	0	0	0	0	0	0.248199	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004827bZIP
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042014 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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