TCONS_00042013 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042013
Unique NameTCONS_00042013
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length402

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042013 ID=TCONS_00042013|Name=TCONS_00042013|organism=Clytia hemisphaerica|type=transcript|length=402bp
TGCGTTTCAGGTTACTTTGGTTTTATTAGATAACAAAAGCTCTGATGGAA
CCTATGAGCAATTGCTAGAATCCACAAAAGATCTTCCTTCAAAGTATATT
CTAACCAAAAACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATT
GAAGGCGGTCCCGAAAGATGCAATTGCTTTGATTCTAgatcttcacctcc
aaatccCTTTGGATTTCTTCGACAGAATaagaaagTTGACCATCGCTGGT
AAAACAGCCTTTTCTCCGACTCTAATGTGCTTTCAAGATCCTTGCTTCCA
CGAACGCTACACTGAGCTAGCTCTGAAGAAAGTCATCTGGCAAGATGATG
GGCCTGGTATCATGGCTATGTATAAATCTGATTGGTCAAGGGTAGGAGGT
AA
Run BLAST on NCBI

protein sequence of TCONS_00042013-protein

>TCONS_00042013-protein ID=TCONS_00042013-protein|Name=TCONS_00042013-protein|organism=Clytia hemisphaerica|type=polypeptide|length=133bp
AFQVTLVLLDNKSSDGTYEQLLESTKDLPSKYILTKNKKFSKVKILNEGL
KAVPKDAIALILDLHLQIPLDFFDRIRKLTIAGKTAFSPTLMCFQDPCFH
ERYTELALKKVIWQDDGPGIMAMYKSDWSRVGG
Run BLAST on NCBI

transcript from alignment at sc0003146:5983..6582-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042013 ID=TCONS_00042013|Name=TCONS_00042013|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0003146:5983..6582- (Clytia hemisphaerica)
TGCGTTTCAGGTTACTTTGGTTTTATTAGATAACAAAAGCTCTGATGGAA
CCTATGAGCAATTGCTAGAATCCACAAAAGATCTTCCTTCAAAGTATATT
CTAACCAAAAACAAGAAATTCAGCAAAGTGAAGATCTTGAACGAAGGATT
GAAGGCGGTCCCGAAAGATGCAATTGCTTTGATTCTAGATCTTCACCTCC
AAATCCCTTTGGATTTCTTCGACAGAATAAGAAAGGTTTGTTTTGATTTT
ATTTTGGTTGAAAAAACAATAAAATAGTGAAGGCTAGAAGCGTGAAGTCT
TTTCTTGTGTGATACTTTCTGAATTTAACGTAACTCTCCAGTTGTTTGAC
AATAATTGAATGTTATTGGACAAGTTGGCAAAATTTTTTGACATGTTTGT
GTACAGTAAAATGCTTCTTTCTTTTCATTAAAGTTGACCATCGCTGGTAA
AACAGCCTTTTCTCCGACTCTAATGTGCTTTCAAGATCCTTGCTTCCACG
AACGCTACACTGAGCTAGCTCTGAAGAAAGTCATCTGGCAAGATGATGGG
CCTGGTATCATGGCTATGTATAAATCTGATTGGTCAAGGGTAGGAGGTAA

Coding sequence (CDS) from alignment at sc0003146:5983..6582-

>TCONS_00042013 ID=TCONS_00042013|Name=TCONS_00042013|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at sc0003146:5983..6582- (Clytia hemisphaerica)
TTGACCATCGCTGGTAAAACAGCCTTTTCTCCGACTCTAATGTGCTTTCA
AGATCCTTGCTTCCACGAACGCTACACTGAGCTAGCTCTGAAGAAAGTCA
TCTGGCAAGATGATGGGCCTGGTATCATGGCTATGTATAAATCTGATTGG
TCAAGGGTAGGAGGTGCGTTTCAGGTTACTTTGGTTTTATTAGATAACAA
AAGCTCTGATGGAACCTATGAGCAATTGCTAGAATCCACAAAAGATCTTC
CTTCAAAGTATATTCTAACCAAAAACAAGAAATTCAGCAAAGTGAAGATC
TTGAACGAAGGATTGAAGGCGGTCCCGAAAGATGCAATTGCTTTGATTCT
AGATCTTCACCTCCAAATCCCTTTGGATTTCTTCGACAGAATAAGAAAGT
TGACCATCGCTGGTAAAACAGCCTTTTCTCCGACTCTAATGTGCTTTCAA
GATCCTTGCTTCCACGAACGCTACACTGAGCTAGCTCTGAAGAAAGTCAT
CTGGCAAGATGATGGGCCTGGTATCATGGCTATGTATAAATCTGATTGGT
CAAGGGTAGGAGGTGCGTTTCAGGTTACTTTGGTTTTATTAGATAACAAA
AGCTCTGATGGAACCTATGAGCAATTGCTAGAATCCACAAAAGATCTTCC
TTCAAAGTATATTCTAACCAAAAACAAGAAATTCAGCAAAGTGAAGATCT
TGAACGAAGGATTGAAGGCGGTCCCGAAAGATGCAATTGCTTTGATTCTA
GATCTTCACCTCCAAATCCCTTTGGATTTCTTCGACAGAATAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025900XLOC_025900Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042013-proteinTCONS_00042013-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042013-exon-sc0003146-1575043694:6348..6582TCONS_00042013-exon-sc0003146-1575043694:6348..6582Clytia hemisphaericaexon
TCONS_00042013-exon-sc0003146-1575043694:5983..6149TCONS_00042013-exon-sc0003146-1575043694:5983..6149Clytia hemisphaericaexon
TCONS_00042013-exon-sc0003146-1510915933:6348..6582TCONS_00042013-exon-sc0003146-1510915933:6348..6582Clytia hemisphaericaexon
TCONS_00042013-exon-sc0003146-1510915933:5983..6149TCONS_00042013-exon-sc0003146-1510915933:5983..6149Clytia hemisphaericaexon
TCONS_00042013-exon-sc0003146-1491911889:6348..6582TCONS_00042013-exon-sc0003146-1491911889:6348..6582Clytia hemisphaericaexon
TCONS_00042013-exon-sc0003146-1491911889:5983..6149TCONS_00042013-exon-sc0003146-1491911889:5983..6149Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003146supercontigsc0003146:5983..6582 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.50719	1.15281	0.6244	0.308734	6.94106	4.16171	6.58302	7.87185	6.53181	5.16231	2.83869	7.91772	2.58527	2.13971	2.96628	3.48332	4.46433	7.40186	3.61942	3.10935	5.19488	4.25521	3.6731	5.10896	3.16541	2.69888	4.50953	4.34693	6.43686	5.75464
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008428Chond_GalNAc
IPR029044Nucleotide-diphossugar_trans
Vocabulary: Molecular Function
TermDefinition
GO:0008376acetylgalactosaminyltransferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0032580Golgi cisterna membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0032580 Golgi cisterna membrane
molecular_function GO:0008376 acetylgalactosaminyltransferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042013 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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