TCONS_00042005 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042005
Unique NameTCONS_00042005
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length533

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042005 ID=TCONS_00042005|Name=TCONS_00042005|organism=Clytia hemisphaerica|type=transcript|length=533bp
CCCCCCTAGAGCTCTATGAAAGCCTTTATAAtacaaaaattgtaagaaat
aGTTTTTTGCTGCTCTCCCTCTCcctatttccaaacttttgccgTCTGGG
CCCAGTGTGCACTATATATCTAACAATTATCGATAAATATAGCAGCTGGA
ACTGCTTGTATCATTTTGGAACCAATAAGGCCACTAGTGCCACTCTAATA
TCCACTTGTTGCATCCTCTTCACTAAACTATGGCGTGCCAGAAAATTCCG
CTCAGATGGGGAGGACCTCAATTGACTGCAAACAAGTTCCAATAATTTTT
ATCTGATTGGGGAGTCAAACACCGTCTATCATCAGCAAAATACCCTCAGT
CTAATGGCAGAACAGAGCTAGGTGTGAAAGAAGCAAAAAGAATCCTATTG
GATAACGTATCACCAAATAGCACCATTGACAACAACAAGGTTGCTTGAGC
AATCTTACAATTGAAACATTCTCCAAACAAAACCACATCATCAGTGAGAA
GTATGACTTTCATGCCAAAATATTGCAGTCCCT
Run BLAST on NCBI

transcript from alignment at sc0003142:10450..10982

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042005 ID=TCONS_00042005|Name=TCONS_00042005|organism=Clytia hemisphaerica|type=transcript|length=533bp|location=Sequence derived from alignment at sc0003142:10450..10982 (Clytia hemisphaerica)
AGGGACTGCAATATTTTGGCATGAAAGTCATACTTCTCACTGATGATGTG
GTTTTGTTTGGAGAATGTTTCAATTGTAAGATTGCTCAAGCAACCTTGTT
GTTGTCAATGGTGCTATTTGGTGATACGTTATCCAATAGGATTCTTTTTG
CTTCTTTCACACCTAGCTCTGTTCTGCCATTAGACTGAGGGTATTTTGCT
GATGATAGACGGTGTTTGACTCCCCAATCAGATAAAAATTATTGGAACTT
GTTTGCAGTCAATTGAGGTCCTCCCCATCTGAGCGGAATTTTCTGGCACG
CCATAGTTTAGTGAAGAGGATGCAACAAGTGGATATTAGAGTGGCACTAG
TGGCCTTATTGGTTCCAAAATGATACAAGCAGTTCCAGCTGCTATATTTA
TCGATAATTGTTAGATATATAGTGCACACTGGGCCCAGAcggcaaaagtt
tggaaataggGAGAGGGAGAGCAGCAAAAAACtatttcttacaatttttg
taTTATAAAGGCTTTCATAGAGCTCTAGGGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025892XLOC_025892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042005-exon-sc0003142-1491911889:10450..10982TCONS_00042005-exon-sc0003142-1491911889:10450..10982Clytia hemisphaericaexon
TCONS_00042005-exon-sc0003142-1510915933:10450..10982TCONS_00042005-exon-sc0003142-1510915933:10450..10982Clytia hemisphaericaexon
TCONS_00042005-exon-sc0003142-1575043694:10450..10982TCONS_00042005-exon-sc0003142-1575043694:10450..10982Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003142supercontigsc0003142:10450..10982 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.596664	0.320337	0.758216	0.84907	4.13464	3.02821	2.56889	2.11467	2.26299	3.48523	3.48726	2.70269	2.85439	3.00124	1.49993	1.81871	1.9534	1.63435	2.41951	2.14314	2.52895	2.24118	0	1.8951	2.2172	2.39635	2.48418	3.79504	2.49476	1.91191
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042005 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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