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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042001 ID=TCONS_00042001|Name=TCONS_00042001|organism=Clytia hemisphaerica|type=transcript|length=1327bp
AGTAATCATATCATATATTATAGGAAGCAGGATGGAAGTTGGCAACCTTC
ACGTGGTCCTTACTGTCAGTGCTGTCGTCTGATCACTATTGCAATCGTCA
GGGGAAACCAATGCCAGCACCTTAGAAGTCGGCAAACATATGTCAATCCT
ACACGAGCCAAATTCAACTAATCAACCCCATCCCTCTAAAACTGTATGAG
CAACTAATCTACAACAGGATTCAACCAATTACAGAATCTTTCCTTCCAAA
TGAATAGGCTGGCTTTCATCCGCGACGATCAAGCCTCAACCAGGTTGCAT
TGCTTACTGAGGATATCGAACATTTTTTCAGGCAGAAACTTAAGGCCTGT
ATTGTGTTTGTCGATCTTTCTGCGGCCTATGATACAGTTTGGCACCGTGG
CCTGACACTCAAGTTGCTTATCCCAAGCCACCACATGGTCCGTGTCATTA
TGCCATTGATATCACAGCGCCGCTTCCACGTGCACATTGGTGGCAAGAAG
TCCCGTTGTCGTACCCTAATCAACGGTGTTCCACAAGGCTCCGTCCTTGT
TCCACTGTTATTCAACATATACACACACGACCTGCTACCCACAACCAGCA
AGAAATACGTATACGCAGATGATCTTGCCATAAAATCTACCTAGAAGGAT
TTCCCTGAGATAGAAATGTTCTCTTCCAAGATATTGATTCCTTGTGGACA
TATTTTTCTAACTGGATGCTTAAGTTAAAGATGGAAAAAATCAGTCTCGA
GTGTGTGTTTCATCTCGCCAATCAGAAAGCTACTTACGAGCTCAACCTTG
CGACCAACGGCGAGAAACTTCACTTTGAGAAAAATCCTGTCTATCTCAGC
GTGACGTTAGATAATATCCTCTCCTTCAACCAGCACCCAACAAACGTTTT
TTCGAAGGTTACAAAATACACtgcaatctttttcaaaatcttggtgGTAG
CCGCTGAGGTGTTGACTTCACCACCCTCCGCACAAACCACACTAGCTCTA
TGCTATTCAACGGCAGAATTTTGCTTGCCAATCTGGAGTCACAACAGGCC
ATTGTAAAAGGTTGACGTTTCTCTAAACAGCGGATGCATCAAACCCACAC
CTGCTGATATCCTTACGGTTCTTTGTGGCTTTGATGCATTTCGTCCTTGT
TAGGACTCGTCAACACTGCATACTGCATATATTCTTTGAATTCCAACATG
CCATTGCATATTGCCTATTTTTTACGCcgattttcagcaaaaaaacagTT
TATGACGTTTATCAAGAAACACTTCTCAAACGAATCTCAGATGAAAAACA
CCCTATATTTCCTTTTTACAAGTAAAG Run BLAST on NCBI protein sequence of TCONS_00042001-protein >TCONS_00042001-protein ID=TCONS_00042001-protein|Name=TCONS_00042001-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
MLKLKMEKISLECVFHLANQKATYELNLATNGEKLHFEKNPVYLSVTLDN
ILSFNQHPTNVFSKVTKYTAIFFKILVVAAEVLTSPPSAQTTLALCYSTA
EFCLPIWSHNRPL Run BLAST on NCBI transcript from alignment at sc0003141:7416..9740+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042001 ID=TCONS_00042001|Name=TCONS_00042001|organism=Clytia hemisphaerica|type=transcript|length=2325bp|location=Sequence derived from alignment at sc0003141:7416..9740+ (Clytia hemisphaerica)
AGTAATCATATCATATATTATAGGAAGCAGGTGAgcaattttccgatttt
cctTATTATATAGTATACGTCATCGTTAGAAATTATAACCCTTTCCACTT
TGAAGTTGTATTAAGAATTCACCTGATTTGGGAGCAGTGCATATAAATAC
GTCATCCTCACTTGTTTGGAAATTCTATATATCATCGTGTATCTCCATAT
AACGTTTACGAAGGACTTAATTGTAAGGTTTGATCATTCGCAACTCGTCC
TCGCCTATACTGTACATGTGTTCAACCCATTCTTTGACTTTCTCGTCTTC
AATTGGTACTGCTGttactttttcatttgtcattttgattttatattact
tttttttGTACACGTGAATTCAACTCTTaaggttttgtttatttttcggG
CCCTCTGAAACTTATCAATAAATTATCAAATAATGCGGTTACAGCAACTC
atataaagtttttttagcTCGTTCGAAGcaaaattacttttcaaaaCTAT
TAAATGCATGCCCTAGGTACTCTGAGAATAGACTAAAAACTCAAACTTTC
AAATCACTTATCGAGCCAATCTTTCCTTACGGGTCTGAGACTTTCAGGCA
GCAAGAGAAAAAacatttgtcaaaaaaatctgTTCTGGAAGAGTCATTCA
TCCGTCCTTTTCACTGCTATAAACCTGCACTATAATACAGTCGCAAAATT
GTACTAATTGATAAAAGTCATATTTAGTTCGTTCTTATCAAACAACACAC
GCTGAGAATTGATCTACAAAAGATTAACCTTATGACAAACAATGTTTGAC
ATCACAAATTATACCAGAACTTTGCACGAAAGTTTGATATTTCAATACAA
GTTCATAAAACGAATCCCAGTTATTCATCAACTTTTTGTTTAAGATGTct
ataatattgaatttttatGAACGTTTGTACAAATACGCTTTGTAATTTGA
TCGACTTGATtagatttatgaattttctgACCTTTTTGTCAGTTCCATGA
GTATCATATGTTTCTTTCTTTGAATTAGGATGGAAGTTGGCAACCTTCAC
GTGGTCCTTACTGTCAGTGCTGTCGTCTGATCACTATTGCAATCGTCAGG
GGAAACCAATGCCAGCACCTTAGAAGTCGGCAAACATATGTCAATCCTAC
ACGAGCCAAATTCAACTAATCAACCCCATCCCTCTAAAACTGTATGAGCA
ACTAATCTACAACAGGATTCAACCAATTACAGAATCTTTCCTTCCAAATG
AATAGGCTGGCTTTCATCCGCGACGATCAAGCCTCAACCAGGTTGCATTG
CTTACTGAGGATATCGAACATTTTTTCAGGCAGAAACTTAAGGCCTGTAT
TGTGTTTGTCGATCTTTCTGCGGCCTATGATACAGTTTGGCACCGTGGCC
TGACACTCAAGTTGCTTATCCCAAGCCACCACATGGTCCGTGTCATTATG
CCATTGATATCACAGCGCCGCTTCCACGTGCACATTGGTGGCAAGAAGTC
CCGTTGTCGTACCCTAATCAACGGTGTTCCACAAGGCTCCGTCCTTGTTC
CACTGTTATTCAACATATACACACACGACCTGCTACCCACAACCAGCAAG
AAATACGTATACGCAGATGATCTTGCCATAAAATCTACCTAGAAGGATTT
CCCTGAGATAGAAATGTTCTCTTCCAAGATATTGATTCCTTGTGGACATA
TTTTTCTAACTGGATGCTTAAGTTAAAGATGGAAAAAATCAGTCTCGAGT
GTGTGTTTCATCTCGCCAATCAGAAAGCTACTTACGAGCTCAACCTTGCG
ACCAACGGCGAGAAACTTCACTTTGAGAAAAATCCTGTCTATCTCAGCGT
GACGTTAGATAATATCCTCTCCTTCAACCAGCACCCAACAAACGTTTTTT
CGAAGGTTACAAAATACACtgcaatctttttcaaaatcttggtgGTAGCC
GCTGAGGTGTTGACTTCACCACCCTCCGCACAAACCACACTAGCTCTATG
CTATTCAACGGCAGAATTTTGCTTGCCAATCTGGAGTCACAACAGGCCAT
TGTAAAAGGTTGACGTTTCTCTAAACAGCGGATGCATCAAACCCACACCT
GCTGATATCCTTACGGTTCTTTGTGGCTTTGATGCATTTCGTCCTTGTTA
GGACTCGTCAACACTGCATACTGCATATATTCTTTGAATTCCAACATGCC
ATTGCATATTGCCTATTTTTTACGCcgattttcagcaaaaaaacagTTTA
TGACGTTTATCAAGAAACACTTCTCAAACGAATCTCAGATGAAAAACACC
CTATATTTCCTTTTTACAAGTAAAG Coding sequence (CDS) from alignment at sc0003141:7416..9740+ >TCONS_00042001 ID=TCONS_00042001|Name=TCONS_00042001|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0003141:7416..9740+ (Clytia hemisphaerica)
ATGCTTAAGTTAAAGATGGAAAAAATCAGTCTCGAGTGTGTGTTTCATCT
CGCCAATCAGAAAGCTACTTACGAGCTCAACCTTGCGACCAACGGCGAGA
AACTTCACTTTGAGAAAAATCCTGTCTATCTCAGCGTGACGTTAGATAAT
ATCCTCTCCTTCAACCAGCACCCAACAAACGTTTTTTCGAAGGTTACAAA
ATACACtgcaatctttttcaaaatcttggtgGTAGCCGCTGAGGTGTTGA
CTTCACCACCCTCCGCACAAACCACACTAGCTCTATGCTATTCAACGGCA
GAATTTTGCTTGCCAATCTGGAGTCACAACAGGCCATTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042001-exon-sc0003141-1491911889:7416..7445 | TCONS_00042001-exon-sc0003141-1491911889:7416..7445 | Clytia hemisphaerica | exon |
| TCONS_00042001-exon-sc0003141-1510915933:7416..7445 | TCONS_00042001-exon-sc0003141-1510915933:7416..7445 | Clytia hemisphaerica | exon |
| TCONS_00042001-exon-sc0003141-1575043694:7416..7445 | TCONS_00042001-exon-sc0003141-1575043694:7416..7445 | Clytia hemisphaerica | exon |
| TCONS_00042001-exon-sc0003141-1491911889:8444..9740 | TCONS_00042001-exon-sc0003141-1491911889:8444..9740 | Clytia hemisphaerica | exon |
| TCONS_00042001-exon-sc0003141-1510915933:8444..9740 | TCONS_00042001-exon-sc0003141-1510915933:8444..9740 | Clytia hemisphaerica | exon |
| TCONS_00042001-exon-sc0003141-1575043694:8444..9740 | TCONS_00042001-exon-sc0003141-1575043694:8444..9740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003141 | supercontig | sc0003141:7416..9740 + |
Blast
The following BLAST results are available for this feature:
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