TCONS_00042000 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042000
Unique NameTCONS_00042000
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length877

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042000 ID=TCONS_00042000|Name=TCONS_00042000|organism=Clytia hemisphaerica|type=transcript|length=877bp
TACTGTCAGCAAGTTATCTGCGTGAGTAATCATATCATATATTATAGGAA
GCAGGTGAgcaattttccgattttcctTATTATATAGTATACGTCATCGT
TAGAAATTATAACCCTTTCCACTTTGAAGTTGTATTAAGAATTCACCTGA
TTTGGGAGCAGTGCATATAAATACGTCATCCTCACTTGTTTGGAAATTCT
ATATATCATCGTGTATCTCCATATAACGTTTACGAAGGACTTAATTGTAA
GGTTTGATCATTCGCAACTCGTCCTCGCCTATACTGTACATGTGTTCAAC
CCATTCTTTGACTTTCTCGTCTTCAATTGGTACTGCTGttactttttcat
ttgtcattttgattttatattacttttttttGTACACGTGAATTCAACTC
TTaaggttttgtttatttttcggGCCCTCTGAAACTTATCAATAAATTAT
CAAATAATGCGGTTACAGCAACTCatataaagtttttttagcTCGTTCGA
AGcaaaattacttttcaaaaCTATTAAATGCATGCCCTAGGTACTCTGAG
AATAGACTAAAAACTCAAACTTTCAAATCACTTATCGAGCCAATCTTTCC
TTACGGGTCTGAGACTTTCAGGCAGCAAGAGAAAAAacatttgtcaaaaa
aatctgTTCTGGAAGAGTCATTCATCCGTCCTTTTCACTGCTATAAACCT
GCACTATAATACAGTCGCAAAATTGTACTAATTGATAAAAGTCATATTTA
GTTCGTTCTTATCAAACAACACACGCTGAGAATTGATCTACAAAAGATTA
ACCTTATGACAAACAATGTTTGACATCACAAATTATACCAGAACTTTGCA
CGAAAGTTTGATATTTCAATACAAGTT
Run BLAST on NCBI

transcript from alignment at sc0003141:7392..8268+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042000 ID=TCONS_00042000|Name=TCONS_00042000|organism=Clytia hemisphaerica|type=transcript|length=877bp|location=Sequence derived from alignment at sc0003141:7392..8268+ (Clytia hemisphaerica)
TACTGTCAGCAAGTTATCTGCGTGAGTAATCATATCATATATTATAGGAA
GCAGGTGAgcaattttccgattttcctTATTATATAGTATACGTCATCGT
TAGAAATTATAACCCTTTCCACTTTGAAGTTGTATTAAGAATTCACCTGA
TTTGGGAGCAGTGCATATAAATACGTCATCCTCACTTGTTTGGAAATTCT
ATATATCATCGTGTATCTCCATATAACGTTTACGAAGGACTTAATTGTAA
GGTTTGATCATTCGCAACTCGTCCTCGCCTATACTGTACATGTGTTCAAC
CCATTCTTTGACTTTCTCGTCTTCAATTGGTACTGCTGttactttttcat
ttgtcattttgattttatattacttttttttGTACACGTGAATTCAACTC
TTaaggttttgtttatttttcggGCCCTCTGAAACTTATCAATAAATTAT
CAAATAATGCGGTTACAGCAACTCatataaagtttttttagcTCGTTCGA
AGcaaaattacttttcaaaaCTATTAAATGCATGCCCTAGGTACTCTGAG
AATAGACTAAAAACTCAAACTTTCAAATCACTTATCGAGCCAATCTTTCC
TTACGGGTCTGAGACTTTCAGGCAGCAAGAGAAAAAacatttgtcaaaaa
aatctgTTCTGGAAGAGTCATTCATCCGTCCTTTTCACTGCTATAAACCT
GCACTATAATACAGTCGCAAAATTGTACTAATTGATAAAAGTCATATTTA
GTTCGTTCTTATCAAACAACACACGCTGAGAATTGATCTACAAAAGATTA
ACCTTATGACAAACAATGTTTGACATCACAAATTATACCAGAACTTTGCA
CGAAAGTTTGATATTTCAATACAAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025888XLOC_025888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042000-exon-sc0003141-1491911889:7392..8268TCONS_00042000-exon-sc0003141-1491911889:7392..8268Clytia hemisphaericaexon
TCONS_00042000-exon-sc0003141-1510915933:7392..8268TCONS_00042000-exon-sc0003141-1510915933:7392..8268Clytia hemisphaericaexon
TCONS_00042000-exon-sc0003141-1575043694:7392..8268TCONS_00042000-exon-sc0003141-1575043694:7392..8268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003141supercontigsc0003141:7392..8268 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0531104	0.0543875	0	0	0	0	0	0	0	0	0	0	0.979567	1.72755	0.889509	1.32972	1.50911	1.50209	2.17357	1.37781	1.82255	1.6233	3.40527	4.51732	6.57426	6.33069	29.4964	37.7362	5.41189	3.38525
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042000 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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