TCONS_00041997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041997
Unique NameTCONS_00041997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length490

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041997 ID=TCONS_00041997|Name=TCONS_00041997|organism=Clytia hemisphaerica|type=transcript|length=490bp
ctGAAAGCTGAGAATGACGGATacatcagcacttttaccgtcctcgattt
tgcgggtcgaAATTGCGGGTTATTCcgaatcgcttcagtcactctaccat
cctcaaaagtgcaaatacatagtAAACTCGCTAAAATGTCTCAAGAATga
tattgaaacaaaaacactTACGCTGTATCTTTTGCAAACTTCAATGGATC
GTCTTTAGTAGGCTGTTCATTGGATGAAGTATAGTGTACACTGTTTATTA
TGGCTGCCACAACCAATGTGATATAGTCAAGTctcatttttcgtttttta
atatTAAAATTAATATAAATAATCTAATTCTACTAGGAAAGATATAAATC
CATTTACATTAAAGATAGTTATGATCAGctttaggctgcacgcatcccct
ctaatatgatttgatataggggatgcgtatcgtctaaGATATACCTGTCC
CagcttacccccgtcttttcttttctcttgtTTGATTATG
Run BLAST on NCBI

transcript from alignment at sc0003138:9708..10197

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041997 ID=TCONS_00041997|Name=TCONS_00041997|organism=Clytia hemisphaerica|type=transcript|length=490bp|location=Sequence derived from alignment at sc0003138:9708..10197 (Clytia hemisphaerica)
CATAATCAAacaagagaaaagaaaagacgggggtaagctGGGACAGGTAT
ATCttagacgatacgcatcccctatatcaaatcatattagaggggatgcg
tgcagcctaaagCTGATCATAACTATCTTTAATGTAAATGGATTTATATC
TTTCCTAGTAGAATTAGATTATTTATATTAATTTTAatattaaaaaacga
aaaatgagACTTGACTATATCACATTGGTTGTGGCAGCCATAATAAACAG
TGTACACTATACTTCATCCAATGAACAGCCTACTAAAGACGATCCATTGA
AGTTTGCAAAAGATACAGCGTAagtgtttttgtttcaatatcATTCTTGA
GACATTTTAGCGAGTTTactatgtatttgcacttttgaggatggtagagt
gactgaagcgattcgGAATAACCCGCAATTtcgacccgcaaaatcgagga
cggtaaaagtgctgatgtATCCGTCATTCTCAGCTTTCag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025885XLOC_025885Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041997-exon-sc0003138-1491911889:9708..10197TCONS_00041997-exon-sc0003138-1491911889:9708..10197Clytia hemisphaericaexon
TCONS_00041997-exon-sc0003138-1510915933:9708..10197TCONS_00041997-exon-sc0003138-1510915933:9708..10197Clytia hemisphaericaexon
TCONS_00041997-exon-sc0003138-1575043694:9708..10197TCONS_00041997-exon-sc0003138-1575043694:9708..10197Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003138supercontigsc0003138:9708..10197 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
33.2148	32.8727	38.3113	41.1664	7.74202	6.44934	19.3162	21.2245	25.1916	28.8373	14.5821	14.1263	12.0915	9.24342	14.3384	15.3873	17.7592	15.8348	7.86767	14.1848	15.6251	16.1856	36.6247	36.023	4.47331	7.0168	16.2734	12.3789	30.1287	27.127
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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