TCONS_00041996 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041996
Unique NameTCONS_00041996
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041996 ID=TCONS_00041996|Name=TCONS_00041996|organism=Clytia hemisphaerica|type=transcript|length=3301bp
ATGGGAAGTAAAATTCCTTGGATACATGAAGATTAGaaaactcaaaaaca
tttttgttggTGAAGATGATGTTTCCGCCGACAACAAGGAACTTGCTTTT
GCTGAGCTTATTCAAGTACTTGATGAACGTTCTATCTCCTTGATAATGAG
AGATGCAAGAGATGATGGACGTAAAGCATTCCAAATACTTCGAGAACATT
ACGCAGGCAGTGGTAAGCCCCGAATTATCACACTTTATACCCAGCTCACT
TCGCTGAAGAAAAAACCTAATGAAACCATTACTGACTACGTTCTACGAGC
AGAATCTGCAGCAAATGCACTTCGTATGTCAAAGGAGACGGTTAGCGATG
GCCTCCTTGTTGCCATGGTTGTTAAGGGGCTACCAGACGAATACCAATCA
TTCATAGCAGTTACAACCCAATCTGAAGAAATCAtccaagattttcaaaa
atttaaacaaactttgaaaaattttgaagacaCTGAAAATGCCAGATCTC
AACGTTCTGCTGGACAAGTACAACCTGATAAAAACTCTGTCATGAAAACC
AACGACCAGCATCATCGTTCTAAAGTTACTTGCTACAACTGTGGAATCCC
AGGACACAAAGCACCAGATTGCACCAAACCAAAGCAGAATCGAAAATACT
GCTCTCATTGCAAGTCTTCGACGCATTTTGAatcaaattgtcgaaaaatc
aaaaagcaTTCATCAAAGAAAGCAGGAAATCTTGACGAAGCAGACCACAG
TTTTGCTTTTAAATGTGATGACAACGACAATAACTTAAAACTTATGTCtg
atattgatacctttttagTGGATTGTGGTGCCACATCTCACATGGTCAAT
ACCGATGCAAATTTTATATCCCCCGATGACGATTTCAAACCGGAAAACCA
TTACATCGAGCTTGCAGATGGATCTCTTGTCATTAATTTAGCAAAGAAAA
GAGGGACAGTGTTAATTTCTTTGCGTACATCTGACAATAAGATTGTTAAA
GCAACATTGGAAAATACCCTGTATGTACCTTCATTTCCGCAATCCATATT
TTCAGTTAGACGAGCACTCGAAAAAGGAGCCAAAGTAATTTTTGATGGCG
AAAAATCAAACCTTATTTACAATGGAACGTCTTTTCCCTTTGTACAACAT
GCTCGTCTCTACTACCTATGCAAATCGTCAGAAAATACCAGTCGTAAAGA
AAGTCTTGAAACTTGGCACAAAATTTTGGGACATTGTAATTTATCTGATG
TGAAAAGTCTAGAAAATGTCGTCCAGGGGATGACTATTACAGAGTCAAAG
CCATTCGACTGTGAAACCTGTGTTTtatccaaacaaacaaacactcGAAA
TGTTGATCCAGACATCAGAGCAACCAAACCCTTTGAGCTTATTCACACTG
ATCTTGCTGGACCTGTGGACCCAGTTGCCAAAGAGGGATATCGATATGCC
ATGATCTTTGTTGACGATTACTCAAGCTGCTCATTTACCTACTTTCTCAA
GGAGAAGTCAGATGCTGTGAAAGCCACCGAAAAGTTCTTTGCAGACACCA
GCCCATATGGTAAGATTAAAACATTGAACTTTCATACTGAGATTATTCCC
AATGGAGATACCGAAAGAATTCGAAGTGATAATGGAGGGGAGTACATCTC
TGAAGAATTTAAAACACTGCTCAGAAATCGTAATATAAAACATGAGCTTA
CATCACCATACTCTCCGCACCAAAATGGTACCTCTGAACGAAATTGGCGT
ACCCTGTTCGAGATGGCCCGGGCACTCATCATTGATTCAGGTTTACCAAA
ATATCTATGGACCTACGCATTGATGACCGCAACACACATCAGAAACCGAT
GCTATGTTCAACGCATCAAGACCACTCCTTACAGCCTTATCACAGGACGA
AAACCTAACATTGCCCAGCTCCACATCTTTGGTACCGTGTGTTACTCATA
CAACCACAACTACGTGAAGAAGCTAGATCCACGTTGCAAGAAAGGTTATT
TTGTGGGCTACGATCGAAACAGCCCATCCTTTCTCGTCTACTACCCTGAA
AACAGAACAGTCATGAAACATAGACTTGTTAAATTTACTGATCGTTTCGA
GCACAGTGATGATGCATCTGAGCCAGATTTCCATATTGAACCAGCTAACC
CAGCTGAAGTTAAGGTCGACGCCAAAGACCACGAAATCAAAGCAGAACCA
GTCAGAGCTGAACCATCACAACCAAAGTCGTATCCTTTGAGGAACCGGCA
AGAACCCAAAGTCGAAGACAAAGATTCTGTCAATCACGTCCACATTGATT
TTTGCTATCATGTCAAAACTCCAGTCACATACCATGAAGCTGTGAATTGC
ACTGAAGCATCAAACTGGCAAATGGCCATGGAGAACGAAATACAGTCACT
GAAACGTAATGATACCTACACACTAACTGATCCGCCAACCAACCGTGCCG
TTGTCGATGGGAAATGGGTATACAAAGTCAAAGGTGACCCAGATCAACCA
ACATTTAAAGCAAGGTATGTTGCCAAAGGTTATAGCCAGATCGAAGGAAT
CGACTACACTGAAACCTTTTCACCTACCGCTCGTATGGAGACAATCCGAT
CACTGATCCAACTTGCTGTTCAAGAAGATTTAATCGTTCATCAAATGGAT
GTCAAAACAGCTTTTCTACACGCACCTATCGATGAAGACATCTACGTATC
TCAACCAATCGGTTATGCCATCGAAAATAAAGTTTGGAAGTTGCAGAAAT
CGTTATATGGCCTTAAGCAAAGCGGCCGCAACTGGCACAAACTCTTACAT
GACTATGTTGTCAATGAACTTAACTTCAAACAGTCTGCATCCGATCCATG
TCTCTTCTCAAAACGTAACGAGAGAGACACAGTCATTCTACTAGTTTGGG
TCGATGATATTATTATAGCAGCAAATTCAATGCAACTCCTGAAGTCAATC
AAAGAAAGCTTATCTACTAAGTTCGAGATGAAAGATCTTGGACAATTATC
CACGTTCCTCGGCATAACATTTGAACACCGAGATGAAACTATCACCATGT
CACAAAGTCACTACTTGGAGAACATTCTAAAAACTTTTGGTTTCAATGAC
TGTAGACCAAGAACGACACCGTGTGAGCAGAACATCAATTCGTACGCTGA
AGCCACACACCAAATATACGACAACCACCAATATCGTCAAATGGTTGGAA
GCCTGATATATGCGATGACTTGTACCCGACCTGATCTATCGTTTGTCGTA
ACCAAACTATCTCAACATCTTTCCTGTCCTGATCCTGGAGATTGCGCAAT
N
Run BLAST on NCBI

protein sequence of TCONS_00041996-protein

>TCONS_00041996-protein ID=TCONS_00041996-protein|Name=TCONS_00041996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1100bp
WEVKFLGYMKIRKLKNIFVGEDDVSADNKELAFAELIQVLDERSISLIMR
DARDDGRKAFQILREHYAGSGKPRIITLYTQLTSLKKKPNETITDYVLRA
ESAANALRMSKETVSDGLLVAMVVKGLPDEYQSFIAVTTQSEEIIQDFQK
FKQTLKNFEDTENARSQRSAGQVQPDKNSVMKTNDQHHRSKVTCYNCGIP
GHKAPDCTKPKQNRKYCSHCKSSTHFESNCRKIKKHSSKKAGNLDEADHS
FAFKCDDNDNNLKLMSDIDTFLVDCGATSHMVNTDANFISPDDDFKPENH
YIELADGSLVINLAKKRGTVLISLRTSDNKIVKATLENTLYVPSFPQSIF
SVRRALEKGAKVIFDGEKSNLIYNGTSFPFVQHARLYYLCKSSENTSRKE
SLETWHKILGHCNLSDVKSLENVVQGMTITESKPFDCETCVLSKQTNTRN
VDPDIRATKPFELIHTDLAGPVDPVAKEGYRYAMIFVDDYSSCSFTYFLK
EKSDAVKATEKFFADTSPYGKIKTLNFHTEIIPNGDTERIRSDNGGEYIS
EEFKTLLRNRNIKHELTSPYSPHQNGTSERNWRTLFEMARALIIDSGLPK
YLWTYALMTATHIRNRCYVQRIKTTPYSLITGRKPNIAQLHIFGTVCYSY
NHNYVKKLDPRCKKGYFVGYDRNSPSFLVYYPENRTVMKHRLVKFTDRFE
HSDDASEPDFHIEPANPAEVKVDAKDHEIKAEPVRAEPSQPKSYPLRNRQ
EPKVEDKDSVNHVHIDFCYHVKTPVTYHEAVNCTEASNWQMAMENEIQSL
KRNDTYTLTDPPTNRAVVDGKWVYKVKGDPDQPTFKARYVAKGYSQIEGI
DYTETFSPTARMETIRSLIQLAVQEDLIVHQMDVKTAFLHAPIDEDIYVS
QPIGYAIENKVWKLQKSLYGLKQSGRNWHKLLHDYVVNELNFKQSASDPC
LFSKRNERDTVILLVWVDDIIIAANSMQLLKSIKESLSTKFEMKDLGQLS
TFLGITFEHRDETITMSQSHYLENILKTFGFNDCRPRTTPCEQNINSYAE
ATHQIYDNHQYRQMVGSLIYAMTCTRPDLSFVVTKLSQHLSCPDPGDCAX
Run BLAST on NCBI

transcript from alignment at sc0003138:2556..5856

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041996 ID=TCONS_00041996|Name=TCONS_00041996|organism=Clytia hemisphaerica|type=transcript|length=3301bp|location=Sequence derived from alignment at sc0003138:2556..5856 (Clytia hemisphaerica)
NATTGCGCAATCTCCAGGATCAGGACAGGAAAGATGTTGAGATAGTTTGG TTACGACAAACGATAGATCAGGTCGGGTACAAGTCATCGCATATATCAGG CTTCCAACCATTTGACGATATTGGTGGTTGTCGTATATTTGGTGTGTGGC TTCAGCGTACGAATTGATGTTCTGCTCACACGGTGTCGTTCTTGGTCTAC AGTCATTGAAACCAAAAGTTTTTAGAATGTTCTCCAAGTAGTGACTTTGT GACATGGTGATAGTTTCATCTCGGTGTTCAAATGTTATGCCGAGGAACGT GGATAATTGTCCAAGATCTTTCATCTCGAACTTAGTAGATAAGCTTTCTT TGATTGACTTCAGGAGTTGCATTGAATTTGCTGCTATAATAATATCATCG ACCCAAACTAGTAGAATGACTGTGTCTCTCTCGTTACGTTTTGAGAAGAG ACATGGATCGGATGCAGACTGTTTGAAGTTAAGTTCATTGACAACATAGT CATGTAAGAGTTTGTGCCAGTTGCGGCCGCTTTGCTTAAGGCCATATAAC GATTTCTGCAACTTCCAAACTTTATTTTCGATGGCATAACCGATTGGTTG AGATACGTAGATGTCTTCATCGATAGGTGCGTGTAGAAAAGCTGTTTTGA CATCCATTTGATGAACGATTAAATCTTCTTGAACAGCAAGTTGGATCAGT GATCGGATTGTCTCCATACGAGCGGTAGGTGAAAAGGTTTCAGTGTAGTC GATTCCTTCGATCTGGCTATAACCTTTGGCAACATACCTTGCTTTAAATG TTGGTTGATCTGGGTCACCTTTGACTTTGTATACCCATTTCCCATCGACA ACGGCACGGTTGGTTGGCGGATCAGTTAGTGTGTAGGTATCATTACGTTT CAGTGACTGTATTTCGTTCTCCATGGCCATTTGCCAGTTTGATGCTTCAG TGCAATTCACAGCTTCATGGTATGTGACTGGAGTTTTGACATGATAGCAA AAATCAATGTGGACGTGATTGACAGAATCTTTGTCTTCGACTTTGGGTTC TTGCCGGTTCCTCAAAGGATACGACTTTGGTTGTGATGGTTCAGCTCTGA CTGGTTCTGCTTTGATTTCGTGGTCTTTGGCGTCGACCTTAACTTCAGCT GGGTTAGCTGGTTCAATATGGAAATCTGGCTCAGATGCATCATCACTGTG CTCGAAACGATCAGTAAATTTAACAAGTCTATGTTTCATGACTGTTCTGT TTTCAGGGTAGTAGACGAGAAAGGATGGGCTGTTTCGATCGTAGCCCACA AAATAACCTTTCTTGCAACGTGGATCTAGCTTCTTCACGTAGTTGTGGTT GTATGAGTAACACACGGTACCAAAGATGTGGAGCTGGGCAATGTTAGGTT TTCGTCCTGTGATAAGGCTGTAAGGAGTGGTCTTGATGCGTTGAACATAG CATCGGTTTCTGATGTGTGTTGCGGTCATCAATGCGTAGGTCCATAGATA TTTTGGTAAACCTGAATCAATGATGAGTGCCCGGGCCATCTCGAACAGGG TACGCCAATTTCGTTCAGAGGTACCATTTTGGTGCGGAGAGTATGGTGAT GTAAGCTCATGTTTTATATTACGATTTCTGAGCAGTGTTTTAAATTCTTC AGAGATGTACTCCCCTCCATTATCACTTCGAATTCTTTCGGTATCTCCAT TGGGAATAATCTCAGTATGAAAGTTCAATGTTTTAATCTTACCATATGGG CTGGTGTCTGCAAAGAACTTTTCGGTGGCTTTCACAGCATCTGACTTCTC CTTGAGAAAGTAGGTAAATGAGCAGCTTGAGTAATCGTCAACAAAGATCA TGGCATATCGATATCCCTCTTTGGCAACTGGGTCCACAGGTCCAGCAAGA TCAGTGTGAATAAGCTCAAAGGGTTTGGTTGCTCTGATGTCTGGATCAAC ATTTCgagtgtttgtttgtttggataAAACACAGGTTTCACAGTCGAATG GCTTTGACTCTGTAATAGTCATCCCCTGGACGACATTTTCTAGACTTTTC ACATCAGATAAATTACAATGTCCCAAAATTTTGTGCCAAGTTTCAAGACT TTCTTTACGACTGGTATTTTCTGACGATTTGCATAGGTAGTAGAGACGAG CATGTTGTACAAAGGGAAAAGACGTTCCATTGTAAATAAGGTTTGATTTT TCGCCATCAAAAATTACTTTGGCTCCTTTTTCGAGTGCTCGTCTAACTGA AAATATGGATTGCGGAAATGAAGGTACATACAGGGTATTTTCCAATGTTG CTTTAACAATCTTATTGTCAGATGTACGCAAAGAAATTAACACTGTCCCT CTTTTCTTTGCTAAATTAATGACAAGAGATCCATCTGCAAGCTCGATGTA ATGGTTTTCCGGTTTGAAATCGTCATCGGGGGATATAAAATTTGCATCGG TATTGACCATGTGAGATGTGGCACCACAATCCActaaaaaggtatcaata tcaGACATAAGTTTTAAGTTATTGTCGTTGTCATCACATTTAAAAGCAAA ACTGTGGTCTGCTTCGTCAAGATTTCCTGCTTTCTTTGATGAAtgctttt tgatttttcgacaatttgatTCAAAATGCGTCGAAGACTTGCAATGAGAG CAGTATTTTCGATTCTGCTTTGGTTTGGTGCAATCTGGTGCTTTGTGTCC TGGGATTCCACAGTTGTAGCAAGTAACTTTAGAACGATGATGCTGGTCGT TGGTTTTCATGACAGAGTTTTTATCAGGTTGTACTTGTCCAGCAGAACGT TGAGATCTGGCATTTTCAGtgtcttcaaaatttttcaaagtttgtttaaa tttttgaaaatcttggaTGATTTCTTCAGATTGGGTTGTAACTGCTATGA ATGATTGGTATTCGTCTGGTAGCCCCTTAACAACCATGGCAACAAGGAGG CCATCGCTAACCGTCTCCTTTGACATACGAAGTGCATTTGCTGCAGATTC TGCTCGTAGAACGTAGTCAGTAATGGTTTCATTAGGTTTTTTCTTCAGCG AAGTGAGCTGGGTATAAAGTGTGATAATTCGGGGCTTACCACTGCCTGCG TAATGTTCTCGAAGTATTTGGAATGCTTTACGTCCATCATCTCTTGCATC TCTCATTATCAAGGAGATAGAACGTTCATCAAGTACTTGAATAAGCTCAG CAAAAGCAAGTTCCTTGTTGTCGGCGGAAACATCATCTTCAccaacaaaa atgtttttgagttttCTAATCTTCATGTATCCAAGGAATTTTACTTCCCA T

Coding sequence (CDS) from alignment at sc0003138:2556..5856

>TCONS_00041996 ID=TCONS_00041996|Name=TCONS_00041996|organism=Clytia hemisphaerica|type=CDS|length=3300bp|location=Sequence derived from alignment at sc0003138:2556..5856 (Clytia hemisphaerica)
NATTGCGCAATCTCCAGGATCAGGACAGGAAAGATGTTGAGATAGTTTGG
TTACGACAAACGATAGATCAGGTCGGGTACAAGTCATCGCATATATCAGG
CTTCCAACCATTTGACGATATTGGTGGTTGTCGTATATTTGGTGTGTGGC
TTCAGCGTACGAATTGATGTTCTGCTCACACGGTGTCGTTCTTGGTCTAC
AGTCATTGAAACCAAAAGTTTTTAGAATGTTCTCCAAGTAGTGACTTTGT
GACATGGTGATAGTTTCATCTCGGTGTTCAAATGTTATGCCGAGGAACGT
GGATAATTGTCCAAGATCTTTCATCTCGAACTTAGTAGATAAGCTTTCTT
TGATTGACTTCAGGAGTTGCATTGAATTTGCTGCTATAATAATATCATCG
ACCCAAACTAGTAGAATGACTGTGTCTCTCTCGTTACGTTTTGAGAAGAG
ACATGGATCGGATGCAGACTGTTTGAAGTTAAGTTCATTGACAACATAGT
CATGTAAGAGTTTGTGCCAGTTGCGGCCGCTTTGCTTAAGGCCATATAAC
GATTTCTGCAACTTCCAAACTTTATTTTCGATGGCATAACCGATTGGTTG
AGATACGTAGATGTCTTCATCGATAGGTGCGTGTAGAAAAGCTGTTTTGA
CATCCATTTGATGAACGATTAAATCTTCTTGAACAGCAAGTTGGATCAGT
GATCGGATTGTCTCCATACGAGCGGTAGGTGAAAAGGTTTCAGTGTAGTC
GATTCCTTCGATCTGGCTATAACCTTTGGCAACATACCTTGCTTTAAATG
TTGGTTGATCTGGGTCACCTTTGACTTTGTATACCCATTTCCCATCGACA
ACGGCACGGTTGGTTGGCGGATCAGTTAGTGTGTAGGTATCATTACGTTT
CAGTGACTGTATTTCGTTCTCCATGGCCATTTGCCAGTTTGATGCTTCAG
TGCAATTCACAGCTTCATGGTATGTGACTGGAGTTTTGACATGATAGCAA
AAATCAATGTGGACGTGATTGACAGAATCTTTGTCTTCGACTTTGGGTTC
TTGCCGGTTCCTCAAAGGATACGACTTTGGTTGTGATGGTTCAGCTCTGA
CTGGTTCTGCTTTGATTTCGTGGTCTTTGGCGTCGACCTTAACTTCAGCT
GGGTTAGCTGGTTCAATATGGAAATCTGGCTCAGATGCATCATCACTGTG
CTCGAAACGATCAGTAAATTTAACAAGTCTATGTTTCATGACTGTTCTGT
TTTCAGGGTAGTAGACGAGAAAGGATGGGCTGTTTCGATCGTAGCCCACA
AAATAACCTTTCTTGCAACGTGGATCTAGCTTCTTCACGTAGTTGTGGTT
GTATGAGTAACACACGGTACCAAAGATGTGGAGCTGGGCAATGTTAGGTT
TTCGTCCTGTGATAAGGCTGTAAGGAGTGGTCTTGATGCGTTGAACATAG
CATCGGTTTCTGATGTGTGTTGCGGTCATCAATGCGTAGGTCCATAGATA
TTTTGGTAAACCTGAATCAATGATGAGTGCCCGGGCCATCTCGAACAGGG
TACGCCAATTTCGTTCAGAGGTACCATTTTGGTGCGGAGAGTATGGTGAT
GTAAGCTCATGTTTTATATTACGATTTCTGAGCAGTGTTTTAAATTCTTC
AGAGATGTACTCCCCTCCATTATCACTTCGAATTCTTTCGGTATCTCCAT
TGGGAATAATCTCAGTATGAAAGTTCAATGTTTTAATCTTACCATATGGG
CTGGTGTCTGCAAAGAACTTTTCGGTGGCTTTCACAGCATCTGACTTCTC
CTTGAGAAAGTAGGTAAATGAGCAGCTTGAGTAATCGTCAACAAAGATCA
TGGCATATCGATATCCCTCTTTGGCAACTGGGTCCACAGGTCCAGCAAGA
TCAGTGTGAATAAGCTCAAAGGGTTTGGTTGCTCTGATGTCTGGATCAAC
ATTTCgagtgtttgtttgtttggataAAACACAGGTTTCACAGTCGAATG
GCTTTGACTCTGTAATAGTCATCCCCTGGACGACATTTTCTAGACTTTTC
ACATCAGATAAATTACAATGTCCCAAAATTTTGTGCCAAGTTTCAAGACT
TTCTTTACGACTGGTATTTTCTGACGATTTGCATAGGTAGTAGAGACGAG
CATGTTGTACAAAGGGAAAAGACGTTCCATTGTAAATAAGGTTTGATTTT
TCGCCATCAAAAATTACTTTGGCTCCTTTTTCGAGTGCTCGTCTAACTGA
AAATATGGATTGCGGAAATGAAGGTACATACAGGGTATTTTCCAATGTTG
CTTTAACAATCTTATTGTCAGATGTACGCAAAGAAATTAACACTGTCCCT
CTTTTCTTTGCTAAATTAATGACAAGAGATCCATCTGCAAGCTCGATGTA
ATGGTTTTCCGGTTTGAAATCGTCATCGGGGGATATAAAATTTGCATCGG
TATTGACCATGTGAGATGTGGCACCACAATCCActaaaaaggtatcaata
tcaGACATAAGTTTTAAGTTATTGTCGTTGTCATCACATTTAAAAGCAAA
ACTGTGGTCTGCTTCGTCAAGATTTCCTGCTTTCTTTGATGAAtgctttt
tgatttttcgacaatttgatTCAAAATGCGTCGAAGACTTGCAATGAGAG
CAGTATTTTCGATTCTGCTTTGGTTTGGTGCAATCTGGTGCTTTGTGTCC
TGGGATTCCACAGTTGTAGCAAGTAACTTTAGAACGATGATGCTGGTCGT
TGGTTTTCATGACAGAGTTTTTATCAGGTTGTACTTGTCCAGCAGAACGT
TGAGATCTGGCATTTTCAGtgtcttcaaaatttttcaaagtttgtttaaa
tttttgaaaatcttggaTGATTTCTTCAGATTGGGTTGTAACTGCTATGA
ATGATTGGTATTCGTCTGGTAGCCCCTTAACAACCATGGCAACAAGGAGG
CCATCGCTAACCGTCTCCTTTGACATACGAAGTGCATTTGCTGCAGATTC
TGCTCGTAGAACGTAGTCAGTAATGGTTTCATTAGGTTTTTTCTTCAGCG
AAGTGAGCTGGGTATAAAGTGTGATAATTCGGGGCTTACCACTGCCTGCG
TAATGTTCTCGAAGTATTTGGAATGCTTTACGTCCATCATCTCTTGCATC
TCTCATTATCAAGGAGATAGAACGTTCATCAAGTACTTGAATAAGCTCAG
CAAAAGCAAGTTCCTTGTTGTCGGCGGAAACATCATCTTCAccaacaaaa
atgtttttgagttttCTAATCTTCATGTATCCAAGGAATTTTACTTCCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025884XLOC_025884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041996-exon-sc0003138-1491911889:2556..5856TCONS_00041996-exon-sc0003138-1491911889:2556..5856Clytia hemisphaericaexon
TCONS_00041996-exon-sc0003138-1510915933:2556..5856TCONS_00041996-exon-sc0003138-1510915933:2556..5856Clytia hemisphaericaexon
TCONS_00041996-exon-sc0003138-1575043694:2556..5856TCONS_00041996-exon-sc0003138-1575043694:2556..5856Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041996-proteinTCONS_00041996-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003138supercontigsc0003138:2556..5856 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.54938 4.41574 4.72044 3.42037 20.433 12.4726 10.46 11.8785 3.9872 15.8797 18.1696 16.6859 4.18396 4.16457 3.87305 4.34676 4.76603 4.61459 6.24717 9.53782 4.63468 9.38549 2.39453 3.88798 6.98523 8.35808 4.89032 10.9277 2.68888 2.54692
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR025724GAG-pre-integrase_dom
IPR013103RVT_2
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041996 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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