TCONS_00041990 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041990
Unique NameTCONS_00041990
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1120

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041990 ID=TCONS_00041990|Name=TCONS_00041990|organism=Clytia hemisphaerica|type=transcript|length=1120bp
NNATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAAC
AACGTCTTATCTTTGCCGGTAAACAACTTGAGGATGGCCGCACCTTGTCT
GACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTCTTACGTTTGAG
AGGAGGTATGCAAATCTTTGTTAAAACCCTCACTGGCAAAACCATCACCT
TGGAAGTGGAACCAAGTGATACCATTGATAACGtgaaagccaaaatccaa
gacAAAGAAGGTATCCCACCAGACCAACAACGTCTCATCTTTGCAGGCAA
ACAATTGGAAGATGGACGCACCCTTTCTGACTACAACATCCAAAAGGAAT
CAACCCTTCATTTGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTTGTC
AAAACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAACCAAGTGACAC
AATCGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG
ATCAACAACGTCTCATCTTTGCTGGCAAACAATTGGAAGATGGTCGAACC
CTCTCTGATTATAATATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCG
ACTCCGTGGTGGGTGTTGATTAAACAAGTTATCATAAACAAGAGACAATA
CATTCTAGTATATTAAAGTCATGACTTGTAACACTTAATTAGCACATCTT
AAATCTTAATAAATGCAATTTTACTGGATAATCCTGTTTTGTGTTAATGT
CATTCCCTTTtactttcttttgaaatttcggCAATTTACTTCTTAATCTT
TGCATCAAAATTCTCACACTTTTGACCAAAATTGGAAATTGTACTCAAAA
AATCTAAGTATTTGATTAATTTGTGAGTAGGTTGAACTTGAAGGAAATTT
GGCAAACAAATTTGTAGAATCGAAAAAATGCCCCAAAGTTAGTAACAATT
CTGTCTCAGTAGTCCATTCAGGCTCATTTGGATAAAAGGTTATTTTGATT
TGTTAAAGAAAAAACTAACTTGATTAAATATTTatgtttaaatttgtttt
tacgCAGTTTTTTACTGTTTCCTCCCTAAACCTCGACAGTTAGGTGCact
aaaagtcttctatataaaTT
Run BLAST on NCBI

transcript from alignment at sc0003136:4936..6055+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041990 ID=TCONS_00041990|Name=TCONS_00041990|organism=Clytia hemisphaerica|type=transcript|length=1120bp|location=Sequence derived from alignment at sc0003136:4936..6055+ (Clytia hemisphaerica)
NNATGTGAAAGCTAAAATCCAAGACAAGGAAGGAATCCCACCAGATCAAC
AACGTCTTATCTTTGCCGGTAAACAACTTGAGGATGGCCGCACCTTGTCT
GACTACAACATCCAAAAGGAATCTACTCTCCACTTGGTCTTACGTTTGAG
AGGAGGTATGCAAATCTTTGTTAAAACCCTCACTGGCAAAACCATCACCT
TGGAAGTGGAACCAAGTGATACCATTGATAACGtgaaagccaaaatccaa
gacAAAGAAGGTATCCCACCAGACCAACAACGTCTCATCTTTGCAGGCAA
ACAATTGGAAGATGGACGCACCCTTTCTGACTACAACATCCAAAAGGAAT
CAACCCTTCATTTGGTCTTGCGATTGAGAGGAGGTATGCAAATCTTTGTC
AAAACCCTCACTGGCAAAACCATCACCTTGGAAGTTGAACCAAGTGACAC
AATCGACAATGTGAAAGCTAAAATCCAAGACAAAGAAGGTATCCCACCAG
ATCAACAACGTCTCATCTTTGCTGGCAAACAATTGGAAGATGGTCGAACC
CTCTCTGATTATAATATCCAAAAAGAATCAACCCTTCACTTGGTCTTGCG
ACTCCGTGGTGGGTGTTGATTAAACAAGTTATCATAAACAAGAGACAATA
CATTCTAGTATATTAAAGTCATGACTTGTAACACTTAATTAGCACATCTT
AAATCTTAATAAATGCAATTTTACTGGATAATCCTGTTTTGTGTTAATGT
CATTCCCTTTtactttcttttgaaatttcggCAATTTACTTCTTAATCTT
TGCATCAAAATTCTCACACTTTTGACCAAAATTGGAAATTGTACTCAAAA
AATCTAAGTATTTGATTAATTTGTGAGTAGGTTGAACTTGAAGGAAATTT
GGCAAACAAATTTGTAGAATCGAAAAAATGCCCCAAAGTTAGTAACAATT
CTGTCTCAGTAGTCCATTCAGGCTCATTTGGATAAAAGGTTATTTTGATT
TGTTAAAGAAAAAACTAACTTGATTAAATATTTatgtttaaatttgtttt
tacgCAGTTTTTTACTGTTTCCTCCCTAAACCTCGACAGTTAGGTGCact
aaaagtcttctatataaaTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025879XLOC_025879Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041990-exon-sc0003136-1491911889:4936..6055TCONS_00041990-exon-sc0003136-1491911889:4936..6055Clytia hemisphaericaexon
TCONS_00041990-exon-sc0003136-1510915933:4936..6055TCONS_00041990-exon-sc0003136-1510915933:4936..6055Clytia hemisphaericaexon
TCONS_00041990-exon-sc0003136-1575043694:4936..6055TCONS_00041990-exon-sc0003136-1575043694:4936..6055Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003136supercontigsc0003136:4936..6055 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1329.59	1296.03	1967.19	1967.65	1039.68	869.733	1138.13	1150.41	736.619	1103.1	1122.47	1219.32	853.824	835.852	694.921	649.281	891.105	789.248	1018.89	1579.75	867.337	1115.42	1313.55	1211.09	1034.78	1038.3	1332.32	1397.67	1161.08	1175.95
Blast
[Close]
BLAST of TCONS_00041990 vs. Swiss-Prot (Human)
Match: UBB (Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1)

HSP 1 Score: 405.601 bits (1041), Expect = 1.607e-141
Identity = 202/204 (99.02%), Postives = 204/204 (100.00%), Query Frame = 2 
Query:    5 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 616
            VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC
Sbjct:   26 VKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGC 229

HSP 2 Score: 299.671 bits (766), Expect = 5.202e-100
Identity = 150/152 (98.68%), Postives = 152/152 (100.00%), Query Frame = 2 
Query:  158 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 613
            MQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
The following BLAST results are available for this feature:
BLAST of TCONS_00041990 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBB1.607e-14199.02Polyubiquitin-B OS=Homo sapiens GN=UBB PE=1 SV=1[more]
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