TCONS_00041986 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041986
Unique NameTCONS_00041986
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041986 ID=TCONS_00041986|Name=TCONS_00041986|organism=Clytia hemisphaerica|type=transcript|length=623bp
CCTTGAGCAGCACACTCGAAAACAAGTGCAGATGCATACTGCAGCTAAAG
CTATCACAGTGAAATGTGTTACAAGGCCTGGTTTTCGTGAAAATTGGTTC
acatatcaaactattttttttagtATTCTTGATGGTGAGCCAGTTACAGT
GGAGCCTTTCGTTGACGGAGCCTTCATCAAGTATCTTAATAATGATGGTG
TACCATGTAAAGTAAGAAATGACTTGAATTTCATGTATGAGAAGGCTGAA
GCTCTTACACATTTTTCGTACCAAGAAAGTGATGAGAAATTGCTCCTTGT
CGACTTGCAAGGCAGCGGTTACACCTTGTACGATCCAGAAATTGCAACAG
CAGATGAActtcaacaaaatgaaaatgaaagatatttttgtgCAGGAAAT
CTGAACGAAACTGCTTTCACCAACTTTTTCGATGCACACAAGTGTAATCT
TTACTGTAGGCTTCTCGGATTAAAAGAAGTGGAATTGGAGGATCCATCAG
TAAATCCATAAAAGACTGTCCGTCGAAAACATTATTTTATTGGCATTGTT
ACTGGCTTTtctgtttgtttgaaaatttgctaccttaagggaacttattt
tggcgagtactaattttggcgaa
Run BLAST on NCBI

protein sequence of TCONS_00041986-protein

>TCONS_00041986-protein ID=TCONS_00041986-protein|Name=TCONS_00041986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
LEQHTRKQVQMHTAAKAITVKCVTRPGFRENWFTYQTIFFSILDGEPVTV
EPFVDGAFIKYLNNDGVPCKVRNDLNFMYEKAEALTHFSYQESDEKLLLV
DLQGSGYTLYDPEIATADELQQNENERYFCAGNLNETAFTNFFDAHKCNL
YCRLLGLKEVELEDPSVNP
Run BLAST on NCBI

transcript from alignment at sc0003133:9816..10438

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041986 ID=TCONS_00041986|Name=TCONS_00041986|organism=Clytia hemisphaerica|type=transcript|length=623bp|location=Sequence derived from alignment at sc0003133:9816..10438 (Clytia hemisphaerica)
ttcgccaaaattagtactcgccaaaataagttcccttaaggtagcaaatt
ttcaaacaaacagaAAAGCCAGTAACAATGCCAATAAAATAATGTTTTCG
ACGGACAGTCTTTTATGGATTTACTGATGGATCCTCCAATTCCACTTCTT
TTAATCCGAGAAGCCTACAGTAAAGATTACACTTGTGTGCATCGAAAAAG
TTGGTGAAAGCAGTTTCGTTCAGATTTCCTGcacaaaaatatctttcatt
ttcattttgttgaagTTCATCTGCTGTTGCAATTTCTGGATCGTACAAGG
TGTAACCGCTGCCTTGCAAGTCGACAAGGAGCAATTTCTCATCACTTTCT
TGGTACGAAAAATGTGTAAGAGCTTCAGCCTTCTCATACATGAAATTCAA
GTCATTTCTTACTTTACATGGTACACCATCATTATTAAGATACTTGATGA
AGGCTCCGTCAACGAAAGGCTCCACTGTAACTGGCTCACCATCAAGAATa
ctaaaaaaaatagtttgatatgtGAACCAATTTTCACGAAAACCAGGCCT
TGTAACACATTTCACTGTGATAGCTTTAGCTGCAGTATGCATCTGCACTT
GTTTTCGAGTGTGCTGCTCAAGG

Coding sequence (CDS) from alignment at sc0003133:9816..10438

>TCONS_00041986 ID=TCONS_00041986|Name=TCONS_00041986|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0003133:9816..10438 (Clytia hemisphaerica)
TTATGGATTTACTGATGGATCCTCCAATTCCACTTCTTTTAATCCGAGAA
GCCTACAGTAAAGATTACACTTGTGTGCATCGAAAAAGTTGGTGAAAGCA
GTTTCGTTCAGATTTCCTGcacaaaaatatctttcattttcattttgttg
aagTTCATCTGCTGTTGCAATTTCTGGATCGTACAAGGTGTAACCGCTGC
CTTGCAAGTCGACAAGGAGCAATTTCTCATCACTTTCTTGGTACGAAAAA
TGTGTAAGAGCTTCAGCCTTCTCATACATGAAATTCAAGTCATTTCTTAC
TTTACATGGTACACCATCATTATTAAGATACTTGATGAAGGCTCCGTCAA
CGAAAGGCTCCACTGTAACTGGCTCACCATCAAGAATactaaaaaaaata
gtttgatatgtGAACCAATTTTCACGAAAACCAGGCCTTGTAACACATTT
CACTGTGATAGCTTTAGCTGCAGTATGCATCTGCACTTGTTTTCGAGTGT
GCTGCTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025875XLOC_025875Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041986-proteinTCONS_00041986-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041986-exon-sc0003133-1491911889:9816..10438TCONS_00041986-exon-sc0003133-1491911889:9816..10438Clytia hemisphaericaexon
TCONS_00041986-exon-sc0003133-1510915933:9816..10438TCONS_00041986-exon-sc0003133-1510915933:9816..10438Clytia hemisphaericaexon
TCONS_00041986-exon-sc0003133-1575043694:9816..10438TCONS_00041986-exon-sc0003133-1575043694:9816..10438Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003133supercontigsc0003133:9816..10438 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.19987	0.579721	0.281978	0.431909	0.133329	0.370486	0.915733	0	1.25074	0.94346	2.85565	0.509099	0.349869	3.14316	0.634552	1.47823	0.737318	0.94426	0	0.549936	0.495218	0.43099	0.553892	0	0	0	0.718467	1.63432	0.248308	0.229334
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004166MHCK_EF2_kinase
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041986 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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