TCONS_00041976 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041976
Unique NameTCONS_00041976
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041976 ID=TCONS_00041976|Name=TCONS_00041976|organism=Clytia hemisphaerica|type=transcript|length=764bp
CCCCGATATGATTACTGATGCTGATTATGCCGACGATCTATGCATCACCT
CTGACCTTCTCAATGATGCAACTGTCCTCCTACATCGTATTGAAGAAGCT
TCCATCAAAATAGGTCTCTGTGTCAATGCAAAAAAGACTTAGTTCATGGT
TTTCAACCAAGCGCATTCAGGTTCAATAAAATCCCGAACAAACCAAAACA
TCCAAGCTGTTCAAGAATTTACCTACCCTGGCAGTAACATTTCCTAACAA
GTAACAAATCAGACTAGCAAAAGCCTGGTCAGCCCTCAACAAACTGGACA
AAATATGGAAATCTAACCTatcagcaaaattaaaaaggaaTTTATTCAGA
GCTACAGTCAAGTCAGTTCTTCTATATGGAGCTACCTCGTGGACCCTAAC
TAAAACCCTCGAGAAAATGCTGGATGGCACGTACACAAGAATGCTTCGGC
CAGTTCTGAATATTTCATGAAGAGAACATCCGACCAAGAGATTACTCCAC
GGAGATCTTCCACCAATAAGCCAAACGTTGAAGGACAGACGTCTCAGGTT
TGCTGGACATTGTTTTAGGAGCAAAGATGAGCTGACTAGCGAGCTTGTCC
TTTGGCAACCAAATCACGGTTTCAAAACACGCAGTAAACCAGCAAAGACG
TATCTTGACCAACTCTGTGAAGACCTTGGCTGCTTGAAAGAAGACCTCCC
GGTGCTCATGAGAGATCGAACACGGTGGAAAGATCAAGTCATGCCGAGCT
CGCTCGACCcgaac
Run BLAST on NCBI

transcript from alignment at sc0003129:2504..3267

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041976 ID=TCONS_00041976|Name=TCONS_00041976|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at sc0003129:2504..3267 (Clytia hemisphaerica)
gttcgGGTCGAGCGAGCTCGGCATGACTTGATCTTTCCACCGTGTTCGAT
CTCTCATGAGCACCGGGAGGTCTTCTTTCAAGCAGCCAAGGTCTTCACAG
AGTTGGTCAAGATACGTCTTTGCTGGTTTACTGCGTGTTTTGAAACCGTG
ATTTGGTTGCCAAAGGACAAGCTCGCTAGTCAGCTCATCTTTGCTCCTAA
AACAATGTCCAGCAAACCTGAGACGTCTGTCCTTCAACGTTTGGCTTATT
GGTGGAAGATCTCCGTGGAGTAATCTCTTGGTCGGATGTTCTCTTCATGA
AATATTCAGAACTGGCCGAAGCATTCTTGTGTACGTGCCATCCAGCATTT
TCTCGAGGGTTTTAGTTAGGGTCCACGAGGTAGCTCCATATAGAAGAACT
GACTTGACTGTAGCTCTGAATAAAttcctttttaattttgctgatAGGTT
AGATTTCCATATTTTGTCCAGTTTGTTGAGGGCTGACCAGGCTTTTGCTA
GTCTGATTTGTTACTTGTTAGGAAATGTTACTGCCAGGGTAGGTAAATTC
TTGAACAGCTTGGATGTTTTGGTTTGTTCGGGATTTTATTGAACCTGAAT
GCGCTTGGTTGAAAACCATGAACTAAGTCTTTTTTGCATTGACACAGAGA
CCTATTTTGATGGAAGCTTCTTCAATACGATGTAGGAGGACAGTTGCATC
ATTGAGAAGGTCAGAGGTGATGCATAGATCGTCGGCATAATCAGCATCAG
TAATCATATCGGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025865XLOC_025865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041976-exon-sc0003129-1491911889:2504..3267TCONS_00041976-exon-sc0003129-1491911889:2504..3267Clytia hemisphaericaexon
TCONS_00041976-exon-sc0003129-1510915933:2504..3267TCONS_00041976-exon-sc0003129-1510915933:2504..3267Clytia hemisphaericaexon
TCONS_00041976-exon-sc0003129-1575043694:2504..3267TCONS_00041976-exon-sc0003129-1575043694:2504..3267Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003129supercontigsc0003129:2504..3267 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.191772	0.0208825	0.367427	0.136554	0.29794	0.162569	1.14284	1.38492	1.76041	3.19828	1.86279	1.32946	0.600931	0.324267	0.118406	0.320984	0.0959748	0.188299	0	0.0943063	0.151091	0.0904393	0.0245534	0.133269	1.01028	1.9018	0	0.0313375	0.103669	0.434987
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041976 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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