TCONS_00041970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041970
Unique NameTCONS_00041970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length596

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041970 ID=TCONS_00041970|Name=TCONS_00041970|organism=Clytia hemisphaerica|type=transcript|length=596bp
NNTCAACTCTACTCGATATAAAAGACACTTGTTTGTGTGTGTGCGCACAT
CAACCAATTTTCTCACTGTACGTACTCTGTCATCAAAAGTACACTCATTA
TCCAACCAACGAAAAGAAGAAGCATGAATTGGCTCTTGCTTTcaacaatt
ttgattttgaatatcCAACTTATAATTTGTCAAGGACCACGCGATGTGAC
GGTGACTCCAGAAACAGCTTTCTCAGTTTGCTCGCTCTGTCCGAAATTCA
CGTCGTCCGTTCAAAGCAAATACACCTTGTGTAATTCTTCAAGCAAGAAA
TATCAGAAATTTCTGTGTAAACGAATGAGTATTGGACCAACTGGTAAAAT
CTCGACAACAAGAAGTACAGAAATATTCTGCAAGACCATTTGTTCTTGGA
AATACAAATCCCTCGGTAAACAAATTATCCACATGAAGTAATTCAACACC
TGCGAATCATTGTTAGATAATTAACTTATCATAATTTATTACAAGTCATA
CTATTGTCCtatataatttatttgtgtgaCCTTATTGTTTTATAATTTGT
AGTTTATAGTATTAAAGTATTAGGAAAGACGATGATTGAATTCAAA
Run BLAST on NCBI

transcript from alignment at sc0003127:4155..5107-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041970 ID=TCONS_00041970|Name=TCONS_00041970|organism=Clytia hemisphaerica|type=transcript|length=953bp|location=Sequence derived from alignment at sc0003127:4155..5107- (Clytia hemisphaerica)
NNTCAACTCTACTCGATATAAAAGACACTTGTTTGTGTGTGTGCGCACAT
CAACCAATTTTCTCACTGTACGTACTCTGTCATCAAAAGTACACTCATTA
TCCAACCAACGAAAAGAAGAAGCATGAATTGGCTCTTGCTTTCAACAATT
TTGATTTTGAATATCCAACTTATAATTTGTCAAGGTATTTTCGTCTTTCT
TTATTTCTTCAAATTTTTACTTCTCTCTTTTAAGCTAAGATAAAGCATTT
AATTGTATCTCTTTTCTATAGGACCACGCGATGTGACGGTGACTCCAGAA
ACAGCTTTCTCAGTTTGCTCGCTCTGTCCGAAATTCACGTCGTCCGTTCA
AAGCAAATACACCTTGTGTAATTCTTCAAGCAAGAAATATCAGAAATTTC
TGGTGAGTTGACCCTTGTTACTTCTTTTTCTGCAAGGTATGTAATGATAT
TTGATGTTCATCTTTTCATGTTTGAAAAATCTTCTTCTCTTTCATCTTTG
CAGTGTAAACGAATGAGTATTGGACCAACTGGTAAAATCTCGACAACAAG
AAGTACAGAAATATTCTGCAAGGTAGGTATTTACACTTTAACATTCACTT
TCGATTTGGTTGACGACTGCTCTCACCGGCTCTCATTTGAGCACTTTTTA
TTAGTTCATATATATCAAAGTCCTTGATACTTTGAATACTGATGCTTGAT
GCAGATAGTGAATTAGACTTTTTTCTTTCATTGTTTTACAGACCATTTGT
TCTTGGAAATACAAATCCCTCGGTAAACAAATTATCCACATGAAGTAATT
CAACACCTGCGAATCATTGTTAGATAATTAACTTATCATAATTTATTACA
AGTCATACTATTGTCCTATATAATTTATTTGTGTGACCTTATTGTTTTAT
AATTTGTAGTTTATAGTATTAAAGTATTAGGAAAGACGATGATTGAATTC
AAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025860XLOC_025860Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041970-exon-sc0003127-1575043694:4924..5107TCONS_00041970-exon-sc0003127-1575043694:4924..5107Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1575043694:4706..4836TCONS_00041970-exon-sc0003127-1575043694:4706..4836Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1575043694:4536..4604TCONS_00041970-exon-sc0003127-1575043694:4536..4604Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1575043694:4155..4366TCONS_00041970-exon-sc0003127-1575043694:4155..4366Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1510915933:4924..5107TCONS_00041970-exon-sc0003127-1510915933:4924..5107Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1510915933:4706..4836TCONS_00041970-exon-sc0003127-1510915933:4706..4836Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1510915933:4536..4604TCONS_00041970-exon-sc0003127-1510915933:4536..4604Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1510915933:4155..4366TCONS_00041970-exon-sc0003127-1510915933:4155..4366Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1491911889:4924..5107TCONS_00041970-exon-sc0003127-1491911889:4924..5107Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1491911889:4706..4836TCONS_00041970-exon-sc0003127-1491911889:4706..4836Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1491911889:4536..4604TCONS_00041970-exon-sc0003127-1491911889:4536..4604Clytia hemisphaericaexon
TCONS_00041970-exon-sc0003127-1491911889:4155..4366TCONS_00041970-exon-sc0003127-1491911889:4155..4366Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003127supercontigsc0003127:4155..5107 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.599749	0.430549	0	0	0.614681	0.597153	5.64995	3.52476	1.75609	3.51558	10.8176	19.4789	9.15586	19.581	6.09345	11.4151	0.148527	0.345308	15.0705	15.8953	7.28502	6.22358	7.6192	2.67115	1.86013	0.561602	0.538283	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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