TCONS_00041969 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041969
Unique NameTCONS_00041969
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041969 ID=TCONS_00041969|Name=TCONS_00041969|organism=Clytia hemisphaerica|type=transcript|length=765bp
TAAAGATACCTTTTCTTTCCCTCATTCTTGAAATTCGCTGTCCGAAAAGA
ACTCCAACCTGTCCGAACCAGTGTCGTCATCAGTGAAAGGTGCATCCTCG
TCAGAACTTTCACCGATTAAATTGATGATCTCGTTACCAAGGTTTGAAGG
CGAGGGCAGGTCTTCAGTCACTTCCTCTTGTGGTAGCAAGTCAGTTTCCA
TCAGTGTGGTGGCTTCTTTTAGCAAGGATAAGGTTTTGGGTTTGGCTGCT
TGTTCAGCCATCGACATGAGGATGGGTACAGCATTCAAGTTCTCATCTTC
TGATGAAgtcttctttctcttcttcttcttccctTTTTTCACTTTACTCA
TTCCAGGAACATCATCCTGACTGTTCATCTCATTGACATCAAAAGCCACA
CATGTGGATGACAGATTGAGCTGTTGTGGTGCACTAGAGTGCACTTGTTT
CTTGTGACTTTCCACATAATCTGAACGATTGAAAGCTTTGCCACATATAT
CACAAATAAACATAGAGCTTGTGTCATGGGCTGCCAAATGTCGATTGAAG
GAGCTTCTGTAAGCAAACTCACTCGAACATACGGGACATTTGAAAGGTTT
CTCCTCGAGGTGAGTTTTCATGTGGTTTTTCAAACTGTCTCTCCTGGTGA
ACGTCTTCTCGCAATGTTGACATTTCAAAGTGGACGAGGCTGGATTATGG
ATCTTGTAGTGACGAGTCCGTGTAGCAGAATCACGAAAACTTTTACCGCA
AACATCacactgaaa
Run BLAST on NCBI

transcript from alignment at sc0003127:5848..6676+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041969 ID=TCONS_00041969|Name=TCONS_00041969|organism=Clytia hemisphaerica|type=transcript|length=829bp|location=Sequence derived from alignment at sc0003127:5848..6676+ (Clytia hemisphaerica)
TAAAGATACCTTTTCTTTCCCTCATTCTTGAAATTCGCTGTCCGAAAAGA
ACTCCAACCTGTCCGAACCAGTGTCGTCATCAGTGAAAGGTGCATCCTCG
TCAGAACTTTCACCGATTAAATTGATGATCTCGTTACCAAGGTTTGAAGG
CGAGGGCAGGTCTTCAGTCACTTCCTCTTGTGGTAGCAAGTCAGTTTCCA
TCAGTGTGGTGGCTTCTTTTAGCAAGGATAAGGTTTTNCTCTTGTGGTAG
CAAGTCAGTTTCCATCAGTGTGGTGGCTTCTTTTAGCAAGGATAAGGTTT
TGGGTTTGGCTGCTTGTTCAGCCATCGACATGAGGATGGGTACAGCATTC
AAGTTCTCATCTTCTGATGAAgtcttctttctcttcttcttcttccctTT
TTTCACTTTACTCATTCCAGGAACATCATCCTGACTGTTCATCTCATTGA
CATCAAAAGCCACACATGTGGATGACAGATTGAGCTGTTGTGGTGCACTA
GAGTGCACTTGTTTCTTGTGACTTTCCACATAATCTGAACGATTGAAAGC
TTTGCCACATATATCACAAATAAACATAGAGCTTGTGTCATGGGCTGCCA
AATGTCGATTGAAGGAGCTTCTGTAAGCAAACTCACTCGAACATACGGGA
CATTTGAAAGGTTTCTCCTCGAGGTGAGTTTTCATGTGGTTTTTCAAACT
GTCTCTCCTGGTGAACGTCTTCTCGCAATGTTGACATTTCAAAGTGGACG
AGGCTGGATTATGGATCTTGTAGTGACGAGTCCGTGTAGCAGAATCACGA
AAACTTTTACCGCAAACATCacactgaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025859XLOC_025859Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041969-exon-sc0003127-1491911889:5848..6079TCONS_00041969-exon-sc0003127-1491911889:5848..6079Clytia hemisphaericaexon
TCONS_00041969-exon-sc0003127-1510915933:5848..6079TCONS_00041969-exon-sc0003127-1510915933:5848..6079Clytia hemisphaericaexon
TCONS_00041969-exon-sc0003127-1575043694:5848..6079TCONS_00041969-exon-sc0003127-1575043694:5848..6079Clytia hemisphaericaexon
TCONS_00041969-exon-sc0003127-1491911889:6144..6676TCONS_00041969-exon-sc0003127-1491911889:6144..6676Clytia hemisphaericaexon
TCONS_00041969-exon-sc0003127-1510915933:6144..6676TCONS_00041969-exon-sc0003127-1510915933:6144..6676Clytia hemisphaericaexon
TCONS_00041969-exon-sc0003127-1575043694:6144..6676TCONS_00041969-exon-sc0003127-1575043694:6144..6676Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003127supercontigsc0003127:5848..6676 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25719	2.636	1.05546	0	3.05355	2.23388	2.01947	2.40345	1.94297	3.51365	2.37373	1.77557	0.14623	0.564793	0.448077	1.04277	1.23221	1.60514	1.62417	0.994552	0.933471	2.51544	0.869865	0	2.19155	4.61438	1.73514	0.303991	1.05561	2.36509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00041969 vs. Swiss-Prot (Human)
Match: ZNF18 (Zinc finger protein 18 OS=Homo sapiens GN=ZNF18 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.030e-20
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = -1 
Query:  448 FQCDVCGKSFRDSATRTRHYKIHNPASSTLKCQHCEKTFTRRDSLKNHMKTHLEEKPFKCPVCSSEFAYRSSFNRHLAAHDTSSMFICDICGKAFNRSDYVESHKK 765
            FQC +C K+F  S+   +H + H       KC +C K F+    L++H K H  EKP+KCP+C   F  RS+FNRH   H     + C  CGK+F+ S  ++ H++
Sbjct:  436 FQCTICKKAFLRSSDFVKHQRTHT-GEKPCKCDYCGKGFSDFSGLRHHEKIHTGEKPYKCPICEKSFIQRSNFNRHQRVHTGEKPYKCSHCGKSFSWSSSLDKHQR 540
The following BLAST results are available for this feature:
BLAST of TCONS_00041969 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZNF181.030e-2037.74Zinc finger protein 18 OS=Homo sapiens GN=ZNF18 PE... [more]
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