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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041960 ID=TCONS_00041960|Name=TCONS_00041960|organism=Clytia hemisphaerica|type=transcript|length=2355bp
TTTGAGGCCAACCTTCGCTAAAAGAGACAGCTCTCACGTTTTTCTGTCGA
GCAATGGTAGACAGATGACTTCAGGGGATGTCAGCAAGAGAATAGATAAT
ATCTGGAAGTCATCTGGTGTCTACGGTGAAAATCCCCCACCAAAGAAGAA
CGTCACTGGCAATATCATCAGGAAGTCAATGACGACTTTGGTGCATGAGT
CAAGTGAAGACAACCAAGCAGTAGCAGACCTCTTAGCACATCGTTTAGGA
ACAGCCGAAAAGATCTATCGAGTAAAGAAGATGGGGCAACAAGCTCGGGC
AGGCGCGACAGCAATCGAAAATGTTACAAGAAGAAATCAAAGCACCGACA
AATCTGCCGGGGCTTCTGGGTCCGAGCCATCAACCAGCAGTAAAGGTCTG
GAGAATGGAAATACCAAAGCACGTGATCGAAGCGATGTTGATGAAGGAGA
CGGCGCAATCAAGAGGGTGACCAGAAGAAGTCAACTTAAAATGATGGAAA
TATCTGTTGGGTAAGTCATGTTTGATTTAATTTCCCATTTGGTAAAATTC
TATACAATTAGAAAACTGAATTTTGTTAAATGTAATCATAAAATCAGATT
ATGCCCCTTCTCACTCAGGGACTGATAATACGAAAGGGAACAAAAGAAAA
GTTTTGATAAAAATGGCCGAATATACGTATCTAGCAGGTGTTTTTTTATT
TTCAAATCCATAGAATGTCTGGATCCGAACCATCGACCAGTAGTAAAGAT
CTGGAAAATGGAATTGCTGAATCATATGATGGAAGCAATGTTGATGAGGA
AGACGAAGAAGAAGTGAGCTCTCATTGCGAAAGAGATAGTGAAGACAGTG
ACGTTATTCCACCTTCAACATGTGGCGATTATGGAAAGACCAAAGTTTTT
ACACATGAAGAAACCACTATAATATACGAGCTACTTCAAGACGTCATCCT
GACTCCTCCGATCAACGGTTCCAGGATCAAAAACGTGTTATCTAGAACCA
AATTAGGAAGTTCGTTTTTGAAAAAGTTTAATATGGAATCTTTGATTAAT
AAAGCTAAATACGGTAAAAAACTTTACAAGGAAAAGAAATTGTCTTTTTC
CAAATAAATGACTTTCTCTGTATCATTTTTATTATAAACTTTGATAATTC
TTTCTTCATAGTATTTTTTATATAACATAGCTATATCCAATGGACGATAG
TAGGAGGTTTTAATACAATCAGTGCCGAAAGATATTAGAAAATTGGGGTA
TTTTAATATTTTTCAGAATTTAAAGGTCGGGCGAGAATTTCCAATTTCAG
TAATTCTACTTTCGTTCTTCGGATATTTCCATTTGAGAGGAGTTAAGATG
CTTCCAGGCTATGTTCTCAGCCATATTGAAATATTTTTGAGCTTTTAGAT
TCCGAGATCCTAAAGTCCTAAGTTTTTAAGGGGGGTTGTACTTTTACGGT
GTGACAGGATCAGCCCTTTTTAGTACGGTATTTGACGAAAAAAGAGATGG
GGAAACGGTATTTTAAAATAAAATCAGACGGTGACGGTGTTACCCTTTTT
TTCAACTTACGGGATTCCGGAATTCAGCAAAAGTTTTGACCGGGAAAAAG
GTATTTCGAACCCCTACAACCCCCCTCTAATGTAAAAAATCAAAGTGAAA
GCTCTACTATTTAAACGTGATTTTCAAGTTTTGAGGGAACTCTCCTTTTT
TGCCAAATATTTCGGTGCTGATTGTAGCGTGGGTTTCTAGTGTCTAAATA
CACCCCATGTAACAGACCCTGCAGGACAACTGGGAAATTTGGTGGGGGAT
ATATTATTtctttcatgaattacccctggacaaacatcaaatcaaccccg
tggacacccaaaattacccctggacattgtgatttaccccctggacattg
caattttttggtattttttcaatacccctaaacaattcatcctccacccc
catgaacggattttttctggaagagcccattgaaCACTTTTTCAAtctga
aaacaatagaattactGTACCTATTGAAATTGCGATATAAATTTTCATCA
CTGCTGTGGAAAAAGTTACTTTGGGGCTGTGGAAATCTTTATCTTGCCAT
TATCCGCCaatatttctcaaaatgacCCAAATTAGTTTCTAAATTAGTCC
AATCTAAAATATTGTAGCGGTGTATCTAGTTGGAACAAATTTGGGCCATT
TAAGGAAATGTGGGTGCATAATAACATAAGATGAGGTTGTGTGATGCTAG
TAGTGTTTTTTATTCTGGATTTgattgttaaatttttaagtaGTATGTAC
TTGTTGTAAAATTCTTTTCTTGATTGCTTTTAATAACTGGAGATGTGTAT
GTCCG Run BLAST on NCBI transcript from alignment at sc0003119:1087..3623+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041960 ID=TCONS_00041960|Name=TCONS_00041960|organism=Clytia hemisphaerica|type=transcript|length=2537bp|location=Sequence derived from alignment at sc0003119:1087..3623+ (Clytia hemisphaerica)
TTTGAGGCCAACCTTCGCTAAAAGAGACAGCTCTCACGTTTTTCTGTCGA
GCAATGGTAGACAGATGACTTCAGGGGATGTCAGCAAGAGAATAGATAAT
ATCTGGAAGTCATCTGGTGTCTACGGTGAAAATCCCCCACCAAAGAAGAA
CGTCACTGGCAATATCATCAGGAAGTCAATGACGACTTTGGTGCATGAGT
CAAGTGAAGACAACCAAGCAGTAGCAGACCTCTTAGCACATCGTTTAGGA
ACAGCCGAAAAGATCTATCGAGTAAAGAAGATGGGGCAACAAGCTCGGGC
AGGCGCGACAGCAATCGAAAATGTTACAAGAAGAAATCAAAGCACCGACA
AATCTGCCGGGTAATTCAGCTACGTTGTATCTTATAAATTCTAACAAATA
TAATTATAATCACTTGCACAAGCCCGAGAAATCATGGAAAAACACTTTCG
AACGTTTAGTTTATTTTATGTTCAAGAAAGTTTTGCAAACACAGGCCGAA
TTCATGTCTTTATCACGTGTTTCTTGATTTTAAAAACCATAGGGCTTCTG
GGTCCGAGCCATCAACCAGCAGTAAAGGTCTGGAGAATGGAAATACCAAA
GCACGTGATCGAAGCGATGTTGATGAAGGAGACGGCGCAATCAAGAGGGT
GACCAGAAGAAGTCAACTTAAAATGATGGAAATATCTGTTGGGTAAGTCA
TGTTTGATTTAATTTCCCATTTGGTAAAATTCTATACAATTAGAAAACTG
AATTTTGTTAAATGTAATCATAAAATCAGATTATGCCCCTTCTCACTCAG
GGACTGATAATACGAAAGGGAACAAAAGAAAAGTTTTGATAAAAATGGCC
GAATATACGTATCTAGCAGGTGTTTTTTTATTTTCAAATCCATAGAATGT
CTGGATCCGAACCATCGACCAGTAGTAAAGATCTGGAAAATGGAATTGCT
GAATCATATGATGGAAGCAATGTTGATGAGGAAGACGAAGAAGAAGTGAG
CTCTCATTGCGAAAGAGATAGTGAAGACAGTGACGTTATTCCACCTTCAA
CATGTGGCGATTATGGAAAGACCAAAGTTTTTACACATGAAGAAACCACT
ATAATATACGAGCTACTTCAAGACGTCATCCTGACTCCTCCGATCAACGG
TTCCAGGATCAAAAACGTGTTATCTAGAACCAAATTAGGAAGTTCGTTTT
TGAAAAAGTTTAATATGGAATCTTTGATTAATAAAGCTAAATACGGTAAA
AAACTTTACAAGGAAAAGAAATTGTCTTTTTCCAAATAAATGACTTTCTC
TGTATCATTTTTATTATAAACTTTGATAATTCTTTCTTCATAGTATTTTT
TATATAACATAGCTATATCCAATGGACGATAGTAGGAGGTTTTAATACAA
TCAGTGCCGAAAGATATTAGAAAATTGGGGTATTTTAATATTTTTCAGAA
TTTAAAGGTCGGGCGAGAATTTCCAATTTCAGTAATTCTACTTTCGTTCT
TCGGATATTTCCATTTGAGAGGAGTTAAGATGCTTCCAGGCTATGTTCTC
AGCCATATTGAAATATTTTTGAGCTTTTAGATTCCGAGATCCTAAAGTCC
TAAGTTTTTAAGGGGGGTTGTACTTTTACGGTGTGACAGGATCAGCCCTT
TTTAGTACGGTATTTGACGAAAAAAGAGATGGGGAAACGGTATTTTAAAA
TAAAATCAGACGGTGACGGTGTTACCCTTTTTTTCAACTTACGGGATTCC
GGAATTCAGCAAAAGTTTTGACCGGGAAAAAGGTATTTCGAACCCCTACA
ACCCCCCTCTAATGTAAAAAATCAAAGTGAAAGCTCTACTATTTAAACGT
GATTTTCAAGTTTTGAGGGAACTCTCCTTTTTTGCCAAATATTTCGGTGC
TGATTGTAGCGTGGGTTTCTAGTGTCTAAATACACCCCATGTAACAGACC
CTGCAGGACAACTGGGAAATTTGGTGGGGGATATATTATTtctttcatga
attacccctggacaaacatcaaatcaaccccgtggacacccaaaattacc
cctggacattgtgatttaccccctggacattgcaattttttggtattttt
tcaatacccctaaacaattcatcctccacccccatgaacggattttttct
ggaagagcccattgaaCACTTTTTCAAtctgaaaacaatagaattactGT
ACCTATTGAAATTGCGATATAAATTTTCATCACTGCTGTGGAAAAAGTTA
CTTTGGGGCTGTGGAAATCTTTATCTTGCCATTATCCGCCaatatttctc
aaaatgacCCAAATTAGTTTCTAAATTAGTCCAATCTAAAATATTGTAGC
GGTGTATCTAGTTGGAACAAATTTGGGCCATTTAAGGAAATGTGGGTGCA
TAATAACATAAGATGAGGTTGTGTGATGCTAGTAGTGTTTTTTATTCTGG
ATTTgattgttaaatttttaagtaGTATGTACTTGTTGTAAAATTCTTTT
CTTGATTGCTTTTAATAACTGGAGATGTGTATGTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041960-exon-sc0003119-1491911889:1087..1446 | TCONS_00041960-exon-sc0003119-1491911889:1087..1446 | Clytia hemisphaerica | exon |
| TCONS_00041960-exon-sc0003119-1510915933:1087..1446 | TCONS_00041960-exon-sc0003119-1510915933:1087..1446 | Clytia hemisphaerica | exon |
| TCONS_00041960-exon-sc0003119-1575043694:1087..1446 | TCONS_00041960-exon-sc0003119-1575043694:1087..1446 | Clytia hemisphaerica | exon |
| TCONS_00041960-exon-sc0003119-1491911889:1629..3623 | TCONS_00041960-exon-sc0003119-1491911889:1629..3623 | Clytia hemisphaerica | exon |
| TCONS_00041960-exon-sc0003119-1510915933:1629..3623 | TCONS_00041960-exon-sc0003119-1510915933:1629..3623 | Clytia hemisphaerica | exon |
| TCONS_00041960-exon-sc0003119-1575043694:1629..3623 | TCONS_00041960-exon-sc0003119-1575043694:1629..3623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003119 | supercontig | sc0003119:1087..3623 + |
Blast
The following BLAST results are available for this feature:
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