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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041959 ID=TCONS_00041959|Name=TCONS_00041959|organism=Clytia hemisphaerica|type=transcript|length=2314bp
TGTTGCTGCTAACATGACGATGGATGAGTTCGCAAAAGCTACAGAAAAAG
ATGGGTTTCAAACAATCAAAGTCAAGAAGCACAAAACCTATTTAAAACAT
GGACCAGCACATGTGACACTGAGATCAAACATATACGGCCATCTTAAAAT
TTATGTTGAGAATTTGAGGCCAACCTTCGCTAAAAGAGACAGCTCTCACG
TTTTTCTGTCGAGCAATGGTAGACAGATGACTTCAGGGGATGTCAGCAAG
AGAATAGATAATATCTGGAAGTCATCTGGTGTCTACGGTGAAAATCCCCC
ACCAAAGAAGAACGTCACTGGCAATATCATCAGGAAGTCAATGACGACTT
TGGTGCATGAGTCAAGTGAAGACAACCAAGCAGTAGCAGACCTCTTAGCA
CATCGTTTAGGAACAGCCGAAAAGATCTATCGAGTAAAGAAGATGGGGCA
ACAAGCTCGGGCAGGCGCGACAGCAATCGAAAATGTTACAAGAAGAAATC
AAAGCACCGACAAATCTGCCGGGGCTTCTGGGTCCGAGCCATCAACCAGC
AGTAAAGGTCTGGAGAATGGAAATACCAAAGCACGTGATCGAAGCGATGT
TGATGAAGGAGACGGCGCAATCAAGAGGGTGACCAGAAGAAGTCAACTTA
AAATGATGGAAATATCTGTTGGAATGTCTGGATCCGAACCATCGACCAGT
AGTAAAGATCTGGAAAATGGAATTGCTGAATCATATGATGGAAGCAATGT
TGATGAGGAAGACGAAGAAGAAGTGAGCTCTCATTGCGAAAGAGATAGTG
AAGACAGTGACGTTATTCCACCTTCAACATGTGGCGATTATGGAAAGACC
AAAGTTTTTACACATGAAGAAACCACTATAATATACGAGCTACTTCAAGA
CGTCATCCTGACTCCTCCGATCAACGGTTCCAGGATCAAAAACGTGTTAT
CTAGAACCAAATTAGGAAGTTCGTTTTTGAAAAAGTTTAATATGGAATCT
TTGATTAATAAAGCTAAATACGGTAAAAAACTTTACAAGGAAAAGAAATT
GTCTTTTTCCAAATAAATGACTTTCTCTGTATCATTTTTATTATAAACTT
TGATAATTCTTTCTTCATAGTATTTTTTATATAACATAGCTATATCCAAT
GGACGATAGTAGGAGGTTTTAATACAATCAGTGCCGAAAGATATTAGAAA
ATTGGGGTATTTTAATATTTTTCAGAATTTAAAGGTCGGGCGAGAATTTC
CAATTTCAGTAATTCTACTTTCGTTCTTCGGATATTTCCATTTGAGAGGA
GTTAAGATGCTTCCAGGCTATGTTCTCAGCCATATTGAAATATTTTTGAG
CTTTTAGATTCCGAGATCCTAAAGTCCTAAGTTTTTAAGGGGGGTTGTAC
TTTTACGGTGTGACAGGATCAGCCCTTTTTAGTACGGTATTTGACGAAAA
AAGAGATGGGGAAACGGTATTTTAAAATAAAATCAGACGGTGACGGTGTT
ACCCTTTTTTTCAACTTACGGGATTCCGGAATTCAGCAAAAGTTTTGACC
GGGAAAAAGGTATTTCGAACCCCTACAACCCCCCTCTAATGTAAAAAATC
AAAGTGAAAGCTCTACTATTTAAACGTGATTTTCAAGTTTTGAGGGAACT
CTCCTTTTTTGCCAAATATTTCGGTGCTGATTGTAGCGTGGGTTTCTAGT
GTCTAAATACACCCCATGTAACAGACCCTGCAGGACAACTGGGAAATTTG
GTGGGGGATATATTATTtctttcatgaattacccctggacaaacatcaaa
tcaaccccgtggacacccaaaattacccctggacattgtgatttaccccc
tggacattgcaattttttggtattttttcaatacccctaaacaattcatc
ctccacccccatgaacggattttttctggaagagcccattgaaCACTTTT
TCAAtctgaaaacaatagaattactGTACCTATTGAAATTGCGATATAAA
TTTTCATCACTGCTGTGGAAAAAGTTACTTTGGGGCTGTGGAAATCTTTA
TCTTGCCATTATCCGCCaatatttctcaaaatgacCCAAATTAGTTTCTA
AATTAGTCCAATCTAAAATATTGTAGCGGTGTATCTAGTTGGAACAAATT
TGGGCCATTTAAGGAAATGTGGGTGCATAATAACATAAGATGAGGTTGTG
TGATGCTAGTAGTGTTTTTTATTCTGGATTTgattgttaaatttttaagt
aGTATGTACTTGTTGTAAAATTCTTTTCTTGATTGCTTTTAATAACTGGA
GATGTGTATGTCCG Run BLAST on NCBI protein sequence of TCONS_00041959-protein >TCONS_00041959-protein ID=TCONS_00041959-protein|Name=TCONS_00041959-protein|organism=Clytia hemisphaerica|type=polypeptide|length=354bp
VAANMTMDEFAKATEKDGFQTIKVKKHKTYLKHGPAHVTLRSNIYGHLKI
YVENLRPTFAKRDSSHVFLSSNGRQMTSGDVSKRIDNIWKSSGVYGENPP
PKKNVTGNIIRKSMTTLVHESSEDNQAVADLLAHRLGTAEKIYRVKKMGQ
QARAGATAIENVTRRNQSTDKSAGASGSEPSTSSKGLENGNTKARDRSDV
DEGDGAIKRVTRRSQLKMMEISVGMSGSEPSTSSKDLENGIAESYDGSNV
DEEDEEEVSSHCERDSEDSDVIPPSTCGDYGKTKVFTHEETTIIYELLQD
VILTPPINGSRIKNVLSRTKLGSSFLKKFNMESLINKAKYGKKLYKEKKL
SFSK Run BLAST on NCBI transcript from alignment at sc0003119:925..3623+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041959 ID=TCONS_00041959|Name=TCONS_00041959|organism=Clytia hemisphaerica|type=transcript|length=2699bp|location=Sequence derived from alignment at sc0003119:925..3623+ (Clytia hemisphaerica)
TGTTGCTGCTAACATGACGATGGATGAGTTCGCAAAAGCTACAGAAAAAG
ATGGGTTTCAAACAATCAAAGTCAAGAAGCACAAAACCTATTTAAAACAT
GGACCAGCACATGTGACACTGAGATCAAACATATACGGCCATCTTAAAAT
TTATGTTGAGAATTTGAGGCCAACCTTCGCTAAAAGAGACAGCTCTCACG
TTTTTCTGTCGAGCAATGGTAGACAGATGACTTCAGGGGATGTCAGCAAG
AGAATAGATAATATCTGGAAGTCATCTGGTGTCTACGGTGAAAATCCCCC
ACCAAAGAAGAACGTCACTGGCAATATCATCAGGAAGTCAATGACGACTT
TGGTGCATGAGTCAAGTGAAGACAACCAAGCAGTAGCAGACCTCTTAGCA
CATCGTTTAGGAACAGCCGAAAAGATCTATCGAGTAAAGAAGATGGGGCA
ACAAGCTCGGGCAGGCGCGACAGCAATCGAAAATGTTACAAGAAGAAATC
AAAGCACCGACAAATCTGCCGGGTAATTCAGCTACGTTGTATCTTATAAA
TTCTAACAAATATAATTATAATCACTTGCACAAGCCCGAGAAATCATGGA
AAAACACTTTCGAACGTTTAGTTTATTTTATGTTCAAGAAAGTTTTGCAA
ACACAGGCCGAATTCATGTCTTTATCACGTGTTTCTTGATTTTAAAAACC
ATAGGGCTTCTGGGTCCGAGCCATCAACCAGCAGTAAAGGTCTGGAGAAT
GGAAATACCAAAGCACGTGATCGAAGCGATGTTGATGAAGGAGACGGCGC
AATCAAGAGGGTGACCAGAAGAAGTCAACTTAAAATGATGGAAATATCTG
TTGGGTAAGTCATGTTTGATTTAATTTCCCATTTGGTAAAATTCTATACA
ATTAGAAAACTGAATTTTGTTAAATGTAATCATAAAATCAGATTATGCCC
CTTCTCACTCAGGGACTGATAATACGAAAGGGAACAAAAGAAAAGTTTTG
ATAAAAATGGCCGAATATACGTATCTAGCAGGTGTTTTTTTATTTTCAAA
TCCATAGAATGTCTGGATCCGAACCATCGACCAGTAGTAAAGATCTGGAA
AATGGAATTGCTGAATCATATGATGGAAGCAATGTTGATGAGGAAGACGA
AGAAGAAGTGAGCTCTCATTGCGAAAGAGATAGTGAAGACAGTGACGTTA
TTCCACCTTCAACATGTGGCGATTATGGAAAGACCAAAGTTTTTACACAT
GAAGAAACCACTATAATATACGAGCTACTTCAAGACGTCATCCTGACTCC
TCCGATCAACGGTTCCAGGATCAAAAACGTGTTATCTAGAACCAAATTAG
GAAGTTCGTTTTTGAAAAAGTTTAATATGGAATCTTTGATTAATAAAGCT
AAATACGGTAAAAAACTTTACAAGGAAAAGAAATTGTCTTTTTCCAAATA
AATGACTTTCTCTGTATCATTTTTATTATAAACTTTGATAATTCTTTCTT
CATAGTATTTTTTATATAACATAGCTATATCCAATGGACGATAGTAGGAG
GTTTTAATACAATCAGTGCCGAAAGATATTAGAAAATTGGGGTATTTTAA
TATTTTTCAGAATTTAAAGGTCGGGCGAGAATTTCCAATTTCAGTAATTC
TACTTTCGTTCTTCGGATATTTCCATTTGAGAGGAGTTAAGATGCTTCCA
GGCTATGTTCTCAGCCATATTGAAATATTTTTGAGCTTTTAGATTCCGAG
ATCCTAAAGTCCTAAGTTTTTAAGGGGGGTTGTACTTTTACGGTGTGACA
GGATCAGCCCTTTTTAGTACGGTATTTGACGAAAAAAGAGATGGGGAAAC
GGTATTTTAAAATAAAATCAGACGGTGACGGTGTTACCCTTTTTTTCAAC
TTACGGGATTCCGGAATTCAGCAAAAGTTTTGACCGGGAAAAAGGTATTT
CGAACCCCTACAACCCCCCTCTAATGTAAAAAATCAAAGTGAAAGCTCTA
CTATTTAAACGTGATTTTCAAGTTTTGAGGGAACTCTCCTTTTTTGCCAA
ATATTTCGGTGCTGATTGTAGCGTGGGTTTCTAGTGTCTAAATACACCCC
ATGTAACAGACCCTGCAGGACAACTGGGAAATTTGGTGGGGGATATATTA
TTtctttcatgaattacccctggacaaacatcaaatcaaccccgtggaca
cccaaaattacccctggacattgtgatttaccccctggacattgcaattt
tttggtattttttcaatacccctaaacaattcatcctccacccccatgaa
cggattttttctggaagagcccattgaaCACTTTTTCAAtctgaaaacaa
tagaattactGTACCTATTGAAATTGCGATATAAATTTTCATCACTGCTG
TGGAAAAAGTTACTTTGGGGCTGTGGAAATCTTTATCTTGCCATTATCCG
CCaatatttctcaaaatgacCCAAATTAGTTTCTAAATTAGTCCAATCTA
AAATATTGTAGCGGTGTATCTAGTTGGAACAAATTTGGGCCATTTAAGGA
AATGTGGGTGCATAATAACATAAGATGAGGTTGTGTGATGCTAGTAGTGT
TTTTTATTCTGGATTTgattgttaaatttttaagtaGTATGTACTTGTTG
TAAAATTCTTTTCTTGATTGCTTTTAATAACTGGAGATGTGTATGTCCG Coding sequence (CDS) from alignment at sc0003119:925..3623+ >TCONS_00041959 ID=TCONS_00041959|Name=TCONS_00041959|organism=Clytia hemisphaerica|type=CDS|length=3195bp|location=Sequence derived from alignment at sc0003119:925..3623+ (Clytia hemisphaerica)
GTTGCTGCTAACATGACGATGGATGAGTTCGCAAAAGCTACAGAAAAAGA
TGGGTTTCAAACAATCAAAGTCAAGAAGCACAAAACCTATTTAAAACATG
GACCAGCACATGTGACACTGAGATCAAACATATACGGCCATCTTAAAATT
TATGTTGAGAATTTGAGGCCAACCTTCGCTAAAAGAGACAGCTCTCACGT
TTTTCTGTCGAGCAATGGTAGACAGATGACTTCAGGGGATGTCAGCAAGA
GAATAGATAATATCTGGAAGTCATCTGGTGTCTACGGTGAAAATCCCCCA
CCAAAGAAGAACGTCACTGGCAATATCATCAGGAAGTCAATGACGACTTT
GGTGCATGAGTCAAGTGAAGACAACCAAGCAGTAGCAGACCTCTTAGCAC
ATCGTTTAGGAACAGCCGAAAAGATCTATCGAGTAAAGAAGATGGGGCAA
CAAGCTCGGGCAGGCGCGACAGCAATCGAAAATGTTACAAGAAGAAATCA
AAGCACCGACAAATCTGCCGGGGCTTCTGGGTCCGAGCCATCAACCAGCA
GTAAAGGTCTGGAGAATGGAAATACCAAAGCACGTGATCGAAGCGATGTT
GATGAAGGAGACGGCGCAATCAAGAGGGTGACCAGAAGAAGTCAACTTAA
AATGATGGAAATATCTGTTGGAATGTCTGGATCCGAACCATCGACCAGTA
GTAAAGATCTGGAAAATGGAATTGCTGAATCATATGATGGAAGCAATGTT
GATGAGGAAGACGAAGAAGAAGTGAGCTCTCATTGCGAAAGAGATAGTGA
AGACAGTGACGTTATTCCACCTTCAACATGTGGCGATTATGGAAAGACCA
AAGTTTTTACACATGAAGAAACCACTATAATATACGAGCTACTTCAAGAC
GTCATCCTGACTCCTCCGATCAACGGTTCCAGGATCAAAAACGTGTTATC
TAGAACCAAATTAGGAAGTTCGTTTTTGAAAAAGTTTAATATGGAATCTT
TGATTAATAAAGCTAAATACGGTAAAAAACTTTACAAGGAAAAGAAATTG
TCTTTTTCCAAATAAGTTGCTGCTAACATGACGATGGATGAGTTCGCAAA
AGCTACAGAAAAAGATGGGTTTCAAACAATCAAAGTCAAGAAGCACAAAA
CCTATTTAAAACATGGACCAGCACATGTGACACTGAGATCAAACATATAC
GGCCATCTTAAAATTTATGTTGAGAATTTGAGGCCAACCTTCGCTAAAAG
AGACAGCTCTCACGTTTTTCTGTCGAGCAATGGTAGACAGATGACTTCAG
GGGATGTCAGCAAGAGAATAGATAATATCTGGAAGTCATCTGGTGTCTAC
GGTGAAAATCCCCCACCAAAGAAGAACGTCACTGGCAATATCATCAGGAA
GTCAATGACGACTTTGGTGCATGAGTCAAGTGAAGACAACCAAGCAGTAG
CAGACCTCTTAGCACATCGTTTAGGAACAGCCGAAAAGATCTATCGAGTA
AAGAAGATGGGGCAACAAGCTCGGGCAGGCGCGACAGCAATCGAAAATGT
TACAAGAAGAAATCAAAGCACCGACAAATCTGCCGGGGCTTCTGGGTCCG
AGCCATCAACCAGCAGTAAAGGTCTGGAGAATGGAAATACCAAAGCACGT
GATCGAAGCGATGTTGATGAAGGAGACGGCGCAATCAAGAGGGTGACCAG
AAGAAGTCAACTTAAAATGATGGAAATATCTGTTGGAATGTCTGGATCCG
AACCATCGACCAGTAGTAAAGATCTGGAAAATGGAATTGCTGAATCATAT
GATGGAAGCAATGTTGATGAGGAAGACGAAGAAGAAGTGAGCTCTCATTG
CGAAAGAGATAGTGAAGACAGTGACGTTATTCCACCTTCAACATGTGGCG
ATTATGGAAAGACCAAAGTTTTTACACATGAAGAAACCACTATAATATAC
GAGCTACTTCAAGACGTCATCCTGACTCCTCCGATCAACGGTTCCAGGAT
CAAAAACGTGTTATCTAGAACCAAATTAGGAAGTTCGTTTTTGAAAAAGT
TTAATATGGAATCTTTGATTAATAAAGCTAAATACGGTAAAAAACTTTAC
AAGGAAAAGAAATTGTCTTTTTCCAAATAAGTTGCTGCTAACATGACGAT
GGATGAGTTCGCAAAAGCTACAGAAAAAGATGGGTTTCAAACAATCAAAG
TCAAGAAGCACAAAACCTATTTAAAACATGGACCAGCACATGTGACACTG
AGATCAAACATATACGGCCATCTTAAAATTTATGTTGAGAATTTGAGGCC
AACCTTCGCTAAAAGAGACAGCTCTCACGTTTTTCTGTCGAGCAATGGTA
GACAGATGACTTCAGGGGATGTCAGCAAGAGAATAGATAATATCTGGAAG
TCATCTGGTGTCTACGGTGAAAATCCCCCACCAAAGAAGAACGTCACTGG
CAATATCATCAGGAAGTCAATGACGACTTTGGTGCATGAGTCAAGTGAAG
ACAACCAAGCAGTAGCAGACCTCTTAGCACATCGTTTAGGAACAGCCGAA
AAGATCTATCGAGTAAAGAAGATGGGGCAACAAGCTCGGGCAGGCGCGAC
AGCAATCGAAAATGTTACAAGAAGAAATCAAAGCACCGACAAATCTGCCG
GGGCTTCTGGGTCCGAGCCATCAACCAGCAGTAAAGGTCTGGAGAATGGA
AATACCAAAGCACGTGATCGAAGCGATGTTGATGAAGGAGACGGCGCAAT
CAAGAGGGTGACCAGAAGAAGTCAACTTAAAATGATGGAAATATCTGTTG
GAATGTCTGGATCCGAACCATCGACCAGTAGTAAAGATCTGGAAAATGGA
ATTGCTGAATCATATGATGGAAGCAATGTTGATGAGGAAGACGAAGAAGA
AGTGAGCTCTCATTGCGAAAGAGATAGTGAAGACAGTGACGTTATTCCAC
CTTCAACATGTGGCGATTATGGAAAGACCAAAGTTTTTACACATGAAGAA
ACCACTATAATATACGAGCTACTTCAAGACGTCATCCTGACTCCTCCGAT
CAACGGTTCCAGGATCAAAAACGTGTTATCTAGAACCAAATTAGGAAGTT
CGTTTTTGAAAAAGTTTAATATGGAATCTTTGATTAATAAAGCTAAATAC
GGTAAAAAACTTTACAAGGAAAAGAAATTGTCTTTTTCCAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041959-exon-sc0003119-1491911889:925..1446 | TCONS_00041959-exon-sc0003119-1491911889:925..1446 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1510915933:925..1446 | TCONS_00041959-exon-sc0003119-1510915933:925..1446 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1575043694:925..1446 | TCONS_00041959-exon-sc0003119-1575043694:925..1446 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1491911889:1629..1778 | TCONS_00041959-exon-sc0003119-1491911889:1629..1778 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1510915933:1629..1778 | TCONS_00041959-exon-sc0003119-1510915933:1629..1778 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1575043694:1629..1778 | TCONS_00041959-exon-sc0003119-1575043694:1629..1778 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1491911889:1982..3623 | TCONS_00041959-exon-sc0003119-1491911889:1982..3623 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1510915933:1982..3623 | TCONS_00041959-exon-sc0003119-1510915933:1982..3623 | Clytia hemisphaerica | exon |
| TCONS_00041959-exon-sc0003119-1575043694:1982..3623 | TCONS_00041959-exon-sc0003119-1575043694:1982..3623 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003119 | supercontig | sc0003119:925..3623 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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