TCONS_00041956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041956
Unique NameTCONS_00041956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length447

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041956 ID=TCONS_00041956|Name=TCONS_00041956|organism=Clytia hemisphaerica|type=transcript|length=447bp
GTCGTGATGCTGTATCATAACATAAACTCCACGAAACCATTTCTCGTCAA
GTAAATCAAGGGTAAGGTTAAATGACTTCATTAAGCACTGAAACTGTACA
ACTCTCTGCAccataaagaaaaaatccagaTAGCCTACACTACATGATCT
GACAGACAAGACGAGAAAGgGAACACCATGAACTGACACGATTTTTGAAG
AAAGCTGATTGACTTATGATCCTTAAATCGAGTTATTTGGCAAGTGACGG
TTACtgatttctttgatgttttgagTGTTTGTTTCAAGAGCTAAAAGTTG
CTTGAAATAGGATACTGATCTTGGAATTTTACTAAAGAAAGTTTGACCAA
AGTTTAACTTATTTGACTAATACTCTTAAGTTTTTGCCCTCATACATTGT
ATACATAGCATTTgtattttttctgtattttcttACCTTGTAATTTA
Run BLAST on NCBI

transcript from alignment at sc0003116:8228..9472+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041956 ID=TCONS_00041956|Name=TCONS_00041956|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at sc0003116:8228..9472+ (Clytia hemisphaerica)
GTCGTGATGCTGTATCATAACATAAACTCCACGAAACCATTTCTCGTCAA
GTAAATCAAGGGTAAGGTAAGGGAATTATCTGCTTATTTGTAtgctactt
tttttaaaagaactataAGCTGGATAATTTGCTATATATGTAGgtatttc
aagttttttttttgagcaaTGTAATATTTTTGGCAAAGCtttcttctcaa
tttttgaCTATTCTGAGATATGattaaaatgattatctttgttTGTGAAT
GAATGATGGAGCAATATACAtcagttttgtttatttttatacaGGTTAAA
TGACTTCATTAAGCACTGAAACTGTACAACTCTCTGCAccataaagaaaa
aatccagaTAGCCTACACTACATGATCTGACAGACAAGACGAGAAAGGTA
TTTATCACAgaattcaattaaattttttcaactaTTCCTAGTCCATTTGC
TTTACAAGGTAACCTTTCCTCTCGAAACTAGAGATCAAATGTATATAAAG
TGATTTTACTAAACCGTTGCTTTATAGCCAATGTTTTGTTAATTTCCCGG
AGTCAAATTTGGGTATGGGTACGTTGTGCTAGGCAGGGTCCCTTTTTTTA
TACTCTGAAGATATCTAACAGGgtgcaaaattttctaattttcaagatga
gtTTCTGATAGGGTcgattattttgattattttggacaattttcagggtg
gaaatgagaaaatttaaaaatttcagctatatacttttatttatttttgc
caCTCTAGGGTGAAAATGGGggatcttttaattttttgttctgaCAGAGT
TCCAATTTTGCCAAAAGTTCACATCTGACAGGatcaacttttcaaactcc
agtggtacttccccgtcggccgtcaagatCAGAGCCCTTGTGTTAATTTC
GTGATAAGATTCCTATTTACTTTTGATAGTTTCACCATATTATtatcgat
tttcaatttttcttcaggGAACACCATGAACTGACACGATTTTTGAAGAA
AGCTGATTGACTTATGATCCTTAAATCGAGTTATTTGGCAAGTGACGGTT
ACtgatttctttgatgttttgagTGTTTGTTTCAAGAGCTAAAAGTTGCT
TGAAATAGGATACTGATCTTGGAATTTTACTAAAGAAAGTTTGACCAAAG
TTTAACTTATTTGACTAATACTCTTAAGTTTTTGCCCTCATACATTGTAT
ACATAGCATTTgtattttttctgtattttcttACCTTGTAATTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025848XLOC_025848Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041956-exon-sc0003116-1491911889:8228..8293TCONS_00041956-exon-sc0003116-1491911889:8228..8293Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1510915933:8228..8293TCONS_00041956-exon-sc0003116-1510915933:8228..8293Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1575043694:8228..8293TCONS_00041956-exon-sc0003116-1575043694:8228..8293Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1491911889:8522..8624TCONS_00041956-exon-sc0003116-1491911889:8522..8624Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1510915933:8522..8624TCONS_00041956-exon-sc0003116-1510915933:8522..8624Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1575043694:8522..8624TCONS_00041956-exon-sc0003116-1575043694:8522..8624Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1491911889:9195..9472TCONS_00041956-exon-sc0003116-1491911889:9195..9472Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1510915933:9195..9472TCONS_00041956-exon-sc0003116-1510915933:9195..9472Clytia hemisphaericaexon
TCONS_00041956-exon-sc0003116-1575043694:9195..9472TCONS_00041956-exon-sc0003116-1575043694:9195..9472Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003116supercontigsc0003116:8228..9472 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73593	1.06032	0	0	0	1.71176	0	0	15.5544	14.7877	8.89488	13.7586	6.93845	4.78806	4.14661	4.80849	14.2145	13.6297	7.09328	11.528	20.2154	6.90585	11.9999	16.4761	4.23232	3.77724	42.0639	33.9657	18.9388	16.5981
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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