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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041952 ID=TCONS_00041952|Name=TCONS_00041952|organism=Clytia hemisphaerica|type=transcript|length=287bp
AACTTTTTATGGACACCACCGAAAAGCCACTAATTAGTTCTTCAAACGTG
AAACTCGAATGCAAAGAATAGGAAGGCTTTTCGAAAGCAAACGAACAAAC
ATAAGATGAAAAAGAAATNCAAAGAATAGGAAGGCTTTTCGAAAGCAAAC
GAACAAACAtaagatgaaaaagaaatgaTGATTTTTCTATTCTTTCATGG
ACACTTGACACTTTCAAAAACGGAAAACATCGTCCCACCactttattata
tattttatgtaaaatgattagaattttaatatatttt Run BLAST on NCBI transcript from alignment at sc0003112:11085..13960+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041952 ID=TCONS_00041952|Name=TCONS_00041952|organism=Clytia hemisphaerica|type=transcript|length=2876bp|location=Sequence derived from alignment at sc0003112:11085..13960+ (Clytia hemisphaerica)
AACTTTTTATGGTAAGATTAATGTCTCAGAAATTTGTTTGCTTTTCCTAA
ACTAAGCCATACGCTTTTATCCGGcttttatacaattttttttccatgtc
accatgaatttttatttctatCTATTTATTTGTATACgcctaaaaaagct
aacatcACACAACTgtaagattatagagcttggtcttaGAGAATTAAAGT
GCAAACCCGTTTTTACAAAACCTttctagccaacccagggcagcaaaaca
gaaattaattgCATCTGCCACCATGACCagccatgttttcttggaaaatg
agcTTTCCTGGgtgtcttctttttcatgttttcatgtaacagaaagctgt
aTTTTGACTAGCCAATGCTGGGTTACCCTGTTTTTGTTGCATAATTTCTC
CGCGCTATGTAGATCTGCCCTTAcggcaagcggactgcattcttaTACGa
aaatgcaaatcgctctagagagatcaggctgtaaaccagaacataaaata
tcaaaaactagactatgaaatagtttacagcctggatatccaggctaacc
tcggaggtcctttaatttaacCTTCGTTCGTTAGCCTTCTAGCTATAAAT
TATCATAAGTGCTAAAGAAGCTCCCTGTAATAGGTGCTACAAGATTCCGT
GAAAACATTTATGTTCCCTGGTTGTtctttgaattgaaaattaatgaaat
tagccaaaaaattgaaagtaacGATTATCACCATCGTTGAATTAGGCAAC
TAAACCAACCTTAGAATGGGCCATTTCAGAAATACTTGTTAATCAGGTGT
GATTAGGTTGATAATCCAGGGTGTTCAGTAAAACGAGTtcaaaatccagg
gtggttaaaagaaatgataaaaaaatccaggggtcatggcgggaatttaa
tttggcggatggccgaaaaagttttttcagaggaaatTTATTTTGGTGGA
AAAAAATTGCGTATATCCCACGGTTACTAAATTAACTGCCATCTTGAGTT
CAAATATAGTCTCGTTTGTGTGAGTGGAGCAAGCTACAATTTCAGCCATT
CAGTTCTCTAACCTAAATGTAAatgtaacacccctgtctcagtgacctgg
TGACATTTTTTTAACTCATGATAATAGCCAAATCTCATCTAGTCACATTT
TGAAGTctcaaaattttccagattcatCATTCAGATCATTTTCGGCAATT
ATTTTGCTAGTATAACAAGGGGGCAGGTATGACCGAATCACTGATACAGG
GTTGTAGTTTGACTTGAGAGGACATACNGAGGGTGCAGATCTGTAATATG
ACTCGAGAGGACGTACTACTCTTTAGCGACGAGCTGTCTCAGTGAGCCGG
TGACATTTAAAACGCGCCGGGATAACTATGAAAAGTCAaatctcatcaaa
aattttcgtAGGAGAATCAGCAGTAATTTTTAGGAATAATAAAgtacaaa
aaatcaatttaatttgcATGGCTGCTCTTGATGTGGTACATAATATAATT
AATGACTAGGGTATGACCATAAATTTCCAGATTCATCATTCAGATCATTT
TCGGCAATTATTTTCGCTAGTATAACAAGGGGGGCAGATATGGCCAgatc
actgatacaggggtgtaatttGACTTGAGAGGACatactacacatttttt
ttgtaagcataacgtttataagcatacttaggctcaaactcggtgaaaat
taagcaaaatgctaagcatacctccaagctgaaatgcaaaaaaaacttGT
GCAGCTTTTCTCAAACGCTGACCTTTTCAGAGTTAcctttaaagctgttt
tagatTTCTTAAACCAAAGATTTTTGCCTGTGGTGccaaattgcaaaaaa
attgtaattttttgtttcgaGATTTCTATCAACAAAATAAAGTCTACAAT
ATagcatataaataagcataaattagggctgaaaattgagattttgctaa
gcatactgagcctcgacccgatttttccgtatgcttataaaaaaagagtg
tacttAATAATACTGAAAAAAGATGTTATAACGAAACGCTTATGTCTAGc
cctttccgtgccgatgtcgtatatatccgacatgcaaattttcactctac
ttgccaatgtcggatatatccgacatcaaatttttttacctaattGCCGA
GGCCTTTAAAAAAGAGGGAGCTCTATTGGCGAGAAATcagcttttaggaa
aatggttttcttatttgccaatgtcgtatatatccgacataaAAAATCCA
AATAGTAATAGTGACAGTATATATTTTAAGTGCTCAAAAGATTTATTTCA
GGTTTATTTTAGTCTatcataaaatatatataaaacaaatgtcaaataca
aatgtcaaacattggcaaataggaataaaatatccttgtcgtatatatcc
gacatcggcaaatcaggttactaaaaaaaattacccctcggCAAATGGAT
CGGGGTACAAAAACAAGGTAACGGCACGCAAAGGGCTAGAGGAACTTTTT
TGTCTTAGAGATAATTGCCTGTCTTTCTCGAAGTAACTACCCTGTCACGG
AAAAACTCTTGTTGTATATTCTTATTCActcttttttcttctcttttcag
GACACCACCGAAAAGCCACTAATTAGTTCTTCAAACGTGAAACTCGAATG
CAAAGAATAGGAAGGCTTTTCGAAAGCAAACGAACAAACATAAGATGAAA
AAGAAATNCAAAGAATAGGAAGGCTTTTCGAAAGCAAACGAACAAACAta
agatgaaaaagaaatgaTGATTTTTCTATTCTTTCATGGACACTTGACAC
TTTCAAAAACGGAAAACATCGTCCCACCactttattatatattttatgta
aaatgattagaattttaatatatttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041952-exon-sc0003112-1491911889:11085..11095 | TCONS_00041952-exon-sc0003112-1491911889:11085..11095 | Clytia hemisphaerica | exon |
| TCONS_00041952-exon-sc0003112-1510915933:11085..11095 | TCONS_00041952-exon-sc0003112-1510915933:11085..11095 | Clytia hemisphaerica | exon |
| TCONS_00041952-exon-sc0003112-1575043694:11085..11095 | TCONS_00041952-exon-sc0003112-1575043694:11085..11095 | Clytia hemisphaerica | exon |
| TCONS_00041952-exon-sc0003112-1491911889:13685..13960 | TCONS_00041952-exon-sc0003112-1491911889:13685..13960 | Clytia hemisphaerica | exon |
| TCONS_00041952-exon-sc0003112-1510915933:13685..13960 | TCONS_00041952-exon-sc0003112-1510915933:13685..13960 | Clytia hemisphaerica | exon |
| TCONS_00041952-exon-sc0003112-1575043694:13685..13960 | TCONS_00041952-exon-sc0003112-1575043694:13685..13960 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003112 | supercontig | sc0003112:11085..13960 + |
Blast
The following BLAST results are available for this feature:
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