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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041951 ID=TCONS_00041951|Name=TCONS_00041951|organism=Clytia hemisphaerica|type=transcript|length=456bp
TAGGTATCTATTAAAATGGCAAAGGTTCGTTACCAAGGCGTTGGTTTGGT
GttgtcaaaataattttatggCGTAACCAAGTTGTTGATATGGCGTCACC
GAGGTATTGATATCGCGTTACCAAGGTATTGGAAGAAAGGTGTTACAAAG
TACTTGACTTAGAGTTACCTACCAAAATCCATCCATTTTAATGgatACCA
CCGAGTACCCACTATATTATTTCTACAGGAAGTAACGGAAAGTCATAGGA
AGAAGAGCAGACCCTTCGAACGCAAACGAACAAAcagaagatgaaaaaga
aattatggTTGTTCTATTATGTTTTCGATGCAGCATTTTTACAACGGAAA
ATATCGTCCCACCACTCACTTTAATATATTTTATGTAAAATGATTAcaat
tttaatatattttaaataCATATAGTGCCTGAAAGATCTATTGGGTGGGC
TTGAGC Run BLAST on NCBI transcript from alignment at sc0003112:3020..8007+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041951 ID=TCONS_00041951|Name=TCONS_00041951|organism=Clytia hemisphaerica|type=transcript|length=4988bp|location=Sequence derived from alignment at sc0003112:3020..8007+ (Clytia hemisphaerica)
TAGGTATCTATTAAAATGGCAAAGGTTCGTTACCAAGGCGTTGGTTTGGT
GttgtcaaaataattttatggCGTAACCAAGTTGTTGATATGGCGTCACC
GAGGTATTGATATCGCGTTACCAAGGTATTGGAAGAAAGGTGTTACAAAG
TACTTGACTTAGAGTTACCTACCAAAATCCATCCATTTTAATGGTAAGAT
TCAAATTCCAGAATATTGATTGCTTTTTGTAAACTAAGCCATGCGCTTTT
AtacattttatcattttggtTTACCATGGCaccatggatattcttaactt
tttttgagaaaactcAAGAGCAGCCAACGGCTAGAAATTACAAATTATCT
GTTCCGAAAGGCAAATTTCCTTAGAAAAATATATCAGTTGTTCTTTTCTT
GCCAGACTCCTGGATAAACTtatctgttcttaaaaaaatcagaCTCCTGG
AAATTTATATCTACTCTGAGGTTAAATCATGATTACTGGAAAAGTTCATC
TGTTCTTATGTCGGtgctttttacacttttggcgaaAACGTGAAAAATTG
ACCACCTTAGGAAAATGAGTCATTGTTATCTCACTACGCACGTTAGCGTC
AAGCTTAGACAAAGTTCAAAGAAAGGAAGGATTGGGCATTCCATTGTCTT
TTACCCCACTTTTCTAGGAAATTTACAGCTCATTTTATAGGCTCTGAAAG
ATGAGAGCACTTAAGGATTATGTGATTCCAAAATGAAAATGGATTATGCC
TTCCATGTCTAATAACTTTTCATGTAATAACTCTATCTCCGTGAAATTTT
GCAGAGTGATAGAGGGAGCTGTAATCTATTTCAGTTTTAAAAATTCTTGA
GGGCCTTCATTAGCGGATATAGGCCGGTGaccaatttcttttgttgtcgg
gATAAGAGTTTTCAAAACTATAAACTCTTCGTTATTTAGAAATCGTATTT
TCAATACTTTGGGAGCACTCAGGGATTCTAGAATTTCAGTCTTCGACCAG
CACTAACCTAGCACTGCTATTTTGGGCATTTGTTTGAAAGAGCTCTATTT
CTTGATAATAAATGTCATCGTGAGTGACTGTTTTGATTTTGGGTCACTTT
AATATTACTGCACGCAGAAAACTCAGTTTGAAGACTATTGGAGCGCTTAA
GGATTGCCTATTCCATTTATTCCTACATTTACAAGGTTTGAAAATGGAAC
GTCTAATCCTGTAAAGCTTGTGATTTTGAACAATAAAATGCAAGAATACG
AGAGAGAGAGCAGTTAATAATGAGTCGCTCAGCAATATTTTAGTTCTGAA
AAAGAGCATTTTAGGATCAAGAAAATCCTTATTTTTTCGATGTTATTTAA
TACCACTTGAAAAATGCTTGAGATGGAACTCAGATAACCACTCACGGGAA
TTAGTGATCCCAGATTGCTCTTTCACGAATATCATATGATTTTACAGTTT
AAATTTGTTaagtttttgtctttttttcctaTTTATGAACAGTCCCAACA
AATATATGTTTCTTGAAgcaataaagtaaaaatttatgTTTCAATCATTT
TGAGTTTAAAGAGGAATCCTTGATCCTAAGCGCCTCTCAATAACCTAAAA
GGGTCCTGTACTACTCTATGATACTTTGCCATGAAGGTTTGATATCTTTT
AAAGACTAATGAAGTCTGACGTTGCGTGGAATAAGATGAAACATTCGACT
TTATTTTCTCTAACTTCGAACCAGCTTGATTTTGGAATGCCTAATCCAAA
AGTGCTCTTCAGTGAGGATTTATAAAATATAGGCATTAGACTTTAGGAAA
ACAATATAATATCCTTCGAGATGATTGCCAGAGTTTCATAATAGATAGAA
ACAGAAAACCTNTAGCTTGATTTTGGAATGCTTGATCCAAAAAGTGCTCT
TCAGTGAGGATTTATAAAATATAGGCATTAGACTTTAGGAAAACAATATA
ATATCCTTCGAGATGATTGCCAGAGTCTCATAATAGATAGTAAcagaaaa
tctttatttttgtaatatttgATCCCTCTCGTATACAATCcgattttgca
tctttgtggaacttttcatccaaaaatgctcatttttctttccatcagac
caaaaaaactgtttttgacGAAAATTAAGTGTCAGGTTTTCgtcaaaagt
gtaaaaaacacccacttatgtaatttaattgaacgCCGAGACGTTCCTGG
AAAAACAGCATCTATTTATTGCTCCTGGATTATCGGAACAGGTATTTCAC
ACTCCTTTCTagattttttgaagtgcttcaAAAATAGTTGGTTCCTGGAT
TTTACTCCAAAATTTCCTCTCCTGAAAAACCAGGGAAAAAAGGaacatat
attttgaaaaattccgccGCTGGCTGCTCTTGAAAATTATCCTAAATTAC
TCTTACCGAAATGGTGTTCCAAATGAAACCTTAATATTACACTTAAAAAT
ACTTCACTATGGTActcccccttctcacagacccggtgggatttttttca
GACTGTGGGGGAGAGGGTAAAATACCGgacaaaactcgatggggattgat
tttcctatcttttttatttaatggCTGAGGATTTGAATTCAATTGTTTTC
GAACCAGAAAATgcagtggggatagaaaaatagcacaataattTGCTCTG
AGGATTTTCTTAACTGATTATTTTCTGCAGGTCAAAAACTAGAGTAAAAT
TTCAACTTGgggcgatattttggccaatttttccattggAAAGGGGTCCT
AGGTGAGTAAAAATGCGGTGTTTTGGTAATATCTTACTATCCTTACAAAG
AATATTCTCATAAAAAGGAAAATCTAAGTCAAAGGTAATTTGTTTAAGGT
GACCAATGCATTTGACAGCAATACAATTTTGATCATCCCACTGCGGCTTT
AAAATTAGACCATTTTCCGCATTTTTTTGTACCTGGTTATCCATTGGGGC
GGATCTGTTTGGGTCTCTGTCTTTTGTCtcctgtttaaaaaggtttagaa
gtggtcaagtaaaaaaaggcATTCCACGGCTGGCGAAATTCCGCTGCTCT
CACAATCTAAACAGATtttagaaaaacttaactcGTGGTGAACTATAAGC
ATTTttattcataagcatataataagcagaCTCTATGCTTCGATGCTTTG
GTAGCTTAATCATACACGGGGCTGACCAAGGGGAAGACacttgcttatat
aaaaaacaacatgtattccgttgttactaaaagaggtaacgagtggtaac
catGTGGTGACGATTGGTAAcgagaggtaacgagtggtaaccagttgaaa
acggtagccctaagtctccaaatttgaatttatcgattctggtgtttttg
caacagatgctgatggctcctgaggttctgcagcaggacctggCATATCT
GTTGAATGTGCAGCAGAAATTGGAGATTCAGgtgaatgttatggtggagt
tgatggttctggtgaatgtggtGGTAAAGTTAGTTGTTTTGGTGAAcgaa
atggtggaattgatagttctggtgaatgtgaatcaaaCATTGACggttct
ggaggttctgcatcagaagttggtgattctggtgaatgtgcatcaggagt
tggtggttctggtgaatgtgatagtggagttgatgattctggtgaatata
atgctggtgttgatggatctagtaaatgcaatggtggagttctggtgaat
atgatggtggagttgatggttctggcgAATGTACGTACAGCAGGATTTTA
TGGTACTGGTGAATGTGATATTGAAGTTGATGGTTCTAGTGAATGTGATG
ATTGaattgatgattctggtgaatgtgatggtggcaATGATGGctctggt
gaatttgatggtggcattgatggTTCTGATGACTGTGCTgtaggagttga
tggttctggtgactTTGCAGCAGGAGTTAATATTCTGATAAATTGTTATT
GAGATCTTATTCTGTGTTGTCATTATATCCTATGAATAACATCTCAATAA
TAATTTATCAGAATATTAACTCCTGTtgcaaattcaccagaaccatcaac
tcctgctgcacatttgCATGAATTACCAactcctactgcacattcaACAG
AATCACCAtttcctgatgcacattcaccagaaccatcaactcctgctgca
cattccccAGAACCATCAAcccctgatgcacattcaccagaacaattaac
tcctgctgtacattccccagaaccatcaactccaccatcacattcaccag
aaccaccaactccaccattgcattcaccagatccatcaacaccagcatta
tattcaccagaatcatcaactccactatcacattcacaagaaccaccaac
tcctgatgcacattcactagaatcaccaactcctgatgcagaacctccag
aaccatcaatgtttgcttcacattcaccagaactatcaattccaccattt
cattcaccaaaacaactatctttaccatcacattcaccagaaccatcaac
tccgcCATAACATTCGCCTGTATCTCCAATttctgctgcacattcaccag
atctgccagatcctgctgcagaacctcaagagccatcagcatctattgca
aaaacaccagaatcgaaaaattcaaatttggagactAAGGGCCAacgttt
tcaactggttaccactcgttaccttttttagtaacaacgcatgTATCCAT
ACTcactctttttttctctttttaggatACCACCGAGTACCCACTATATT
ATTTCTACAGGAAGTAACGGAAAGTCATAGGAAGAAGAGCAGACCCTTCG
AACGCAAACGAACAAAcagaagatgaaaaagaaattatggTTGTTCTATT
ATGTTTTCGATGCAGCATTTTTACAACGGAAAATATCGTCCCACCACTCA
CTTTAATATATTTTATGTAAAATGATTAcaattttaatatattttaaata
CATATAGTGCCTGAAAGATCTATTGGGTGGGCTTGAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041951-exon-sc0003112-1491911889:3020..3212 | TCONS_00041951-exon-sc0003112-1491911889:3020..3212 | Clytia hemisphaerica | exon |
| TCONS_00041951-exon-sc0003112-1510915933:3020..3212 | TCONS_00041951-exon-sc0003112-1510915933:3020..3212 | Clytia hemisphaerica | exon |
| TCONS_00041951-exon-sc0003112-1575043694:3020..3212 | TCONS_00041951-exon-sc0003112-1575043694:3020..3212 | Clytia hemisphaerica | exon |
| TCONS_00041951-exon-sc0003112-1491911889:7745..8007 | TCONS_00041951-exon-sc0003112-1491911889:7745..8007 | Clytia hemisphaerica | exon |
| TCONS_00041951-exon-sc0003112-1510915933:7745..8007 | TCONS_00041951-exon-sc0003112-1510915933:7745..8007 | Clytia hemisphaerica | exon |
| TCONS_00041951-exon-sc0003112-1575043694:7745..8007 | TCONS_00041951-exon-sc0003112-1575043694:7745..8007 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003112 | supercontig | sc0003112:3020..8007 + |
Blast
The following BLAST results are available for this feature:
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