TCONS_00041949 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041949
Unique NameTCONS_00041949
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041949 ID=TCONS_00041949|Name=TCONS_00041949|organism=Clytia hemisphaerica|type=transcript|length=1317bp
CGCGTTGTTAAGCCTTTCGGGTTTTCGCTTCATATTTAGATCACAGACGG
TATGAATGAAGCCATCCGAGACAAGGTTAACCCAAATACGCTGACGTCAG
TAGAAATTGGATCAATCATAAAAAGCCTCCTTCAAAATCATCAACATCGA
CAACTTATAGAACTCATTGATCAAATTATCATCAATCCAAGTTGTCATAG
CAATGACGATTTATTTTCTTGCGTCCTCGATAACACTAATATAAGAAAGA
AACTTTCCGCGAACACACTGTGTGTGCTATTCACAAacaattttcgaatg
tttgaacAATATTTGCTTGGATTCATAAAAAACATGTTTCAAAAGTACCC
GCTGCTTTGTCGTGATGACGTTAGGATGATTTGTGAGCAGAATCGTCTTT
TTGAGCTTTTGAAGCACGACGACAGATTTGTCATTGGGTTtaaagaaata
ttgaaaagttGTTTCTACACAATGGGCTCGAACCCTGTCCTCTCTTTATT
TATGTGGACCGTCATTGGTGAACTGAACCTTGGTACAAGTGAAGataaag
AAAGTTTCGAAGATGCTTTACTTTCAATACAAGAGACAGATAATGGGAGG
TAATTCTAAATTCTCCTTCTGGTTTGAATGTTGATTTATGCATGNTATAA
CATATTTATATTGCCTTACTTTTTAGATCACGTTTAAACATCAATAATAC
AATAAAGTTgggtttttgtttatttgttgttGGGGACTTGGTGATTTGTG
GAAGTACATGCTATTttgttgttcttaatttgttatACAACATGGCATCT
ACAAGTACCTTTTCAGGGCATTCAAGTCCTGCTTCTATATCAAGGAAGAA
CAGTAATTTTAATTTACGGAATATATTTCGATCATCCAACAAGAGACATA
AAAGCAAAGAGAGTATCGATACTGTCAGTGTTAAGTCATGTGAAAAAACT
TCTTCGAAATCACCAAATAGTGATTCTAAACCAGACCAATCCATGTTGAT
GTGTAACATATGTTTTTCATGGAAGAACAATAATTTGTTTCCTGTCTTAC
TGAGTTGCGAACATAGAAATTGTATTGATTGTTTAAAACAGTACTTGATT
ATAGCGGTCAAGGAATGTCGGGTAATGGTATCATGCCCAGAATGCTCAGA
AGTATTTCACCCGTCTGATGTTAAAATGATATTCAGTGACGATAACTTTT
ATGCAAAATATGAAGAATTCACATTACGTAGAGCTTTAGTTGGTATACCA
GACATTAGATGGTGCCCAGCACCTGATTGCGGTTATGCGGTTATAGCCTC
TGGTTGTGCAAGCTGNN
Run BLAST on NCBI

protein sequence of TCONS_00041949-protein

>TCONS_00041949-protein ID=TCONS_00041949-protein|Name=TCONS_00041949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MNEAIRDKVNPNTLTSVEIGSIIKSLLQNHQHRQLIELIDQIIINPSCHS
NDDLFSCVLDNTNIRKKLSANTLCVLFTNNFRMFEQYLLGFIKNMFQKYP
LLCRDDVRMICEQNRLFELLKHDDRFVIGFKEILKSCFYTMGSNPVLSLF
MWTVIGELNLGTSEDKESFEDALLSIQETDNGR
Run BLAST on NCBI

transcript from alignment at sc0003111:7558..10117-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041949 ID=TCONS_00041949|Name=TCONS_00041949|organism=Clytia hemisphaerica|type=transcript|length=2560bp|location=Sequence derived from alignment at sc0003111:7558..10117- (Clytia hemisphaerica)
CGCGTTGTTAAGCCTTTCGGGTTTTCGCTTCATATTTAGATCACAGACGG
TATGAATGAAGCCATCCGAGACAAGGTTAACCCAAATACGCTGACGTCAG
TAGAAATTGGATCAATCATAAAAAGCCTCCTTCAAAATCATCAACATCGA
CAACTTATAGAACTCATTGATCAAATTATCATCAATCCAAGTTGTCATAG
CAATGACGATTTATTTTCTTGCGTCCTCGATAACACTAATATAAGAAAGA
AACTTTCCGCGAACACACTGTGTGTGCTATTCACAAACAATTTTCGAATG
TTTGAACAATATTTGCTTGGATTCATAAAAAACATGTTTCAAAAGTACCC
GCTGCTTTGTCGTGATGACGTTAGGATGATTTGTGAGCAGAATCGTCTTT
TTGAGGTATGCTGCTTGTCTCTTCCACCCCCCCCCCTTTAAAGTGTTTAT
AAATGCTTAAAATACATAACGTACACTATACACTATTTCGACTTTAGCCG
TCAATTGCCGCTTTTTGTCCGTTTTACCAACCGTCCCAGTCTTTTTTTTC
GCACCTGTAGACAATAGAAAAAGAGTTAAAAAAAGGATTGGATCGAGTTT
AGGATAATTAAATAATAAAGTGGCGCGCGCCTGACCGCGCGACTATGGAG
AAAAAGATGTATTCGCTTACACAGCATTTTTAAACAAAAGAAAAAGTACT
TTCTCTCCCTCCTGCGTTAAGGCCTGTTTCCATCGATCGCGCGAGCGTGC
ACGCTAGGGCAAAATTTCCTAAAATAACACATTGACGTCACGAATTAAAT
TTCCTTGTGCTCTTTTCTACGCTGAAAAGTTTCAACTTTTTTGAGCGTAC
AGGAGCGCACATCACAATTGATAATCTTTCAACCAATCAAGAAAGAGAAA
TACTGCTGAGTTAACAAAAAAGTGTAAACATACAGATTGTGTTCGAGTCC
ACCTCTTTCTTGATGGAAAAACATTGATCGCGCGGAGTGTGCGGCCAAAT
CAATTTTAAGAATTTTGGCCTAGCGTGCACGCTCGCGGGATTGATGGAAA
CAGGCCTTTTCGTGAGCACAAACCTTGGGAAACTCGTTGTTATTTCTGCT
TTGTCAGCATAAACTGCGGACTTCTTTTCTAAATTTCAAAAAAAAAATTA
CTCTTTAAGGTATGTCATAAGGTTAATTGACAGCTTCTTTTTTTTTGTTT
ATAACTTCCGAAAAAGACATTTTTTAAGCAATAAAAATATATATTTTCTG
AAAGTCAATAAAATTTCCTAAATTGCACTTGTATCATGACTTGACTTTCC
AATCCTTGATTTGGCCAGTACCAAGCAAGGTCCTTTCATCATGCGTGACA
CCTCCTTTTAGAGGCTCTTTGAATTGAATGTTTTATCCAGCATTCGTATC
CTACTATCCCTTATATACTTTCGGATCTTTGCTTTCAGCTTTTGAAGCAC
GACGACAGATTTGTCATTGGGTTTAAAGAAATATTGAAAAGTTGTTTCTA
CACAATGGGCTCGAACCCTGTCCTCTCTTTATTTATGTGGACCGTCATTG
GTGAACTGAACCTTGGTACAAGTGAAGGTACTGCTGGAACTTTTATTTTT
TTTTGAAATTCTGTTTTCTTTGAGTATATTTACTGCTTCCATAATCCTAT
CACAAAGTTTCTGATTTTAATGATTTAATGATCTCGAATTGAAATCATCA
TATAGCTGTCGATGTTCAAACAGAATATACTATCATCGACCAAGATTTTA
AATTCCAGCAGAATTACAATCTATTATTTTTTTTAAGATAAAGAAAGTTT
CGAAGATGCTTTACTTTCAATACAAGAGACAGATAATGGGAGGTAATTCT
AAATTCTCCTTCTGGTTTGAATGTTGATTTATGCATGNTATAACATATTT
ATATTGCCTTACTTTTTAGATCACGTTTAAACATCAATAATACAATAAAG
TTGGGTTTTTGTTTATTTGTTGTTGGGGACTTGGTGATTTGTGGAAGTAC
ATGCTATTTTGTTGTTCTTAATTTGTTATACAACATGGCATCTACAAGTA
CCTTTTCAGGGCATTCAAGTCCTGCTTCTATATCAAGGAAGAACAGTAAT
TTTAATTTACGGAATATATTTCGATCATCCAACAAGAGACATAAAAGCAA
AGAGAGTATCGATACTGTCAGTGTTAAGTCATGTGAAAAAACTTCTTCGA
AATCACCAAATAGTGATTCTAAACCAGACCAATCCATGTTGATGTGTAAC
ATATGTTTTTCATGGAAGAACAATAATTTGTTTCCTGTCTTACTGAGTTG
CGAACATAGAAATTGTATTGATTGTTTAAAACAGTACTTGATTATAGCGG
TCAAGGAATGTCGGGTAATGGTATCATGCCCAGAATGCTCAGAAGTATTT
CACCCGTCTGATGTTAAAATGATATTCAGTGACGATAACTTTTATGCAAA
ATATGAAGAATTCACATTACGTAGAGCTTTAGTTGGTATACCAGACATTA
GATGGTGCCCAGCACCTGATTGCGGTTATGCGGTTATAGCCTCTGGTTGT
GCAAGCTGNN

Coding sequence (CDS) from alignment at sc0003111:7558..10117-

>TCONS_00041949 ID=TCONS_00041949|Name=TCONS_00041949|organism=Clytia hemisphaerica|type=CDS|length=1656bp|location=Sequence derived from alignment at sc0003111:7558..10117- (Clytia hemisphaerica)
ATAAAGAAAGTTTCGAAGATGCTTTACTTTCAATACAAGAGACAGATAAT
GGGAGGTAACTTTTGAAGCACGACGACAGATTTGTCATTGGGTTTAAAGA
AATATTGAAAAGTTGTTTCTACACAATGGGCTCGAACCCTGTCCTCTCTT
TATTTATGTGGACCGTCATTGGTGAACTGAACCTTGGTACAAGTGAAGAT
GAATGAAGCCATCCGAGACAAGGTTAACCCAAATACGCTGACGTCAGTAG
AAATTGGATCAATCATAAAAAGCCTCCTTCAAAATCATCAACATCGACAA
CTTATAGAACTCATTGATCAAATTATCATCAATCCAAGTTGTCATAGCAA
TGACGATTTATTTTCTTGCGTCCTCGATAACACTAATATAAGAAAGAAAC
TTTCCGCGAACACACTGTGTGTGCTATTCACAAACAATTTTCGAATGTTT
GAACAATATTTGCTTGGATTCATAAAAAACATGTTTCAAAAGTACCCGCT
GCTTTGTCGTGATGACGTTAGGATGATTTGTGAGCAGAATCGTCTTTTTG
AGATAAAGAAAGTTTCGAAGATGCTTTACTTTCAATACAAGAGACAGATA
ATGGGAGGTAACTTTTGAAGCACGACGACAGATTTGTCATTGGGTTTAAA
GAAATATTGAAAAGTTGTTTCTACACAATGGGCTCGAACCCTGTCCTCTC
TTTATTTATGTGGACCGTCATTGGTGAACTGAACCTTGGTACAAGTGAAG
ATGAATGAAGCCATCCGAGACAAGGTTAACCCAAATACGCTGACGTCAGT
AGAAATTGGATCAATCATAAAAAGCCTCCTTCAAAATCATCAACATCGAC
AACTTATAGAACTCATTGATCAAATTATCATCAATCCAAGTTGTCATAGC
AATGACGATTTATTTTCTTGCGTCCTCGATAACACTAATATAAGAAAGAA
ACTTTCCGCGAACACACTGTGTGTGCTATTCACAAACAATTTTCGAATGT
TTGAACAATATTTGCTTGGATTCATAAAAAACATGTTTCAAAAGTACCCG
CTGCTTTGTCGTGATGACGTTAGGATGATTTGTGAGCAGAATCGTCTTTT
TGAGATAAAGAAAGTTTCGAAGATGCTTTACTTTCAATACAAGAGACAGA
TAATGGGAGGTAACTTTTGAAGCACGACGACAGATTTGTCATTGGGTTTA
AAGAAATATTGAAAAGTTGTTTCTACACAATGGGCTCGAACCCTGTCCTC
TCTTTATTTATGTGGACCGTCATTGGTGAACTGAACCTTGGTACAAGTGA
AGATGAATGAAGCCATCCGAGACAAGGTTAACCCAAATACGCTGACGTCA
GTAGAAATTGGATCAATCATAAAAAGCCTCCTTCAAAATCATCAACATCG
ACAACTTATAGAACTCATTGATCAAATTATCATCAATCCAAGTTGTCATA
GCAATGACGATTTATTTTCTTGCGTCCTCGATAACACTAATATAAGAAAG
AAACTTTCCGCGAACACACTGTGTGTGCTATTCACAAACAATTTTCGAAT
GTTTGAACAATATTTGCTTGGATTCATAAAAAACATGTTTCAAAAGTACC
CGCTGCTTTGTCGTGATGACGTTAGGATGATTTGTGAGCAGAATCGTCTT
TTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025841XLOC_025841Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041949-proteinTCONS_00041949-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041949-exon-sc0003111-1575043694:9713..10117TCONS_00041949-exon-sc0003111-1575043694:9713..10117Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1575043694:8541..8679TCONS_00041949-exon-sc0003111-1575043694:8541..8679Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1575043694:7558..8330TCONS_00041949-exon-sc0003111-1575043694:7558..8330Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1510915933:9713..10117TCONS_00041949-exon-sc0003111-1510915933:9713..10117Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1510915933:8541..8679TCONS_00041949-exon-sc0003111-1510915933:8541..8679Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1510915933:7558..8330TCONS_00041949-exon-sc0003111-1510915933:7558..8330Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1491911889:9713..10117TCONS_00041949-exon-sc0003111-1491911889:9713..10117Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1491911889:8541..8679TCONS_00041949-exon-sc0003111-1491911889:8541..8679Clytia hemisphaericaexon
TCONS_00041949-exon-sc0003111-1491911889:7558..8330TCONS_00041949-exon-sc0003111-1491911889:7558..8330Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003111supercontigsc0003111:7558..10117 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.51508	9.57161	8.99489	8.23776	35.1876	26.7513	26.216	25.7699	8.31311	10.5586	9.06578	7.2918	9.02128	6.77513	8.87109	11.4682	9.37878	10.4675	7.28622	10.1046	11.1555	9.77057	9.00937	9.54452	10.3444	13.1148	21.8399	19.1694	14.213	14.7905
Blast
[Close]
BLAST of TCONS_00041949 vs. Swiss-Prot (Human)
Match: RN19A (E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens GN=RNF19A PE=1 SV=3)

HSP 1 Score: 143.665 bits (361), Expect = 1.179e-36
Identity = 61/106 (57.55%), Postives = 78/106 (73.58%), Query Frame = 3 
Query:  996 LMCNICFSWKNNNLFPVLLSCEHRNCIDCLKQYLIIAVKECRVMVSCPECSEVFHPSDVKMIFSDDNFYAKYEEFTLRRALVGIPDIRWCPAPDCGYAVIASGCAS 1313
            + C +C    + + FP +++C HR+C+DCL+QYL I + E RV +SCPEC+E F+P D+++I SDD    KYEEF LRR LV  PD RWCPAPDCGYAVIA GCAS
Sbjct:  130 IECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCPECTERFNPHDIRLILSDDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCAS 235
The following BLAST results are available for this feature:
BLAST of TCONS_00041949 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN19A1.179e-3657.55E3 ubiquitin-protein ligase RNF19A OS=Homo sapiens... [more]
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