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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041946 ID=TCONS_00041946|Name=TCONS_00041946|organism=Clytia hemisphaerica|type=transcript|length=1459bp
CGATAATCTTCGATAAGCTTCGATAAGTGTTCGATAGCTTTGATTAATGT
TTGATCTTTATCATATTTTCTCTTTTTTTAGACTTCGATCGAAGAGAACA
AAACATCAAAGACGCAATGGAAAATAATATATAACATTCGGAACATTCAC
CGCGCTTCTCTTCGTTCTGATTAGTCTACCGTACGATTCGCATTGGAAAG
GAGTGCCGTGGCAATTTAAGGCAATGCAGAAATCAGAAGATTTATGCTAA
GTACGACTGTTGAAGCAATACTCAACAGCTTTTACTTGATAGCAATGACT
TATCGATGGTTCGTGTGACGGCCGGACGGTCATCCTGGATGCCTTATCGT
TTCACCGATTTTGAGCccgaccccctcccccctgataggtaaagctctaa
aggagcggacccacagatttctgtaaagcccgaagggctaaatcTCGTGC
CtcaagctcttccaagcaagaAATTACCTGTTCCAGATGTGAATTTCGCT
Atcgacacgctttgctctaaaggtaccgtaggacggggtgaatcggatac
ccggggtgaatcggataatTTGTTTAATCGCCTCTCATACTTCACTGACG
ATGTCTTTTTCCATTCTGTTTTCAGATCACGTTCACTGATCGATCAAGCT
ATCGGAAAAATATGGCTTCAAAGATCTGGAACATGTTCTtcggaaattga
agaagaaaaccttCTGATTTCCGGACCCTTTTTTGAAATGCCGAATAAGC
ataagaaataatgaaataatgaaGCGACCGTGATTGGAGATTCCTTTGGC
ATTGTGTTCTACGAAAGCCAGTTGTATACAATCTTTGGTTCACTAAACGA
AAAACAATGTCTATTCTTCGTATTTTCATGCTAAAGTTAGGGCGGAAAAT
TGTTCGCGTTAAAACGCGAATCGCCCATTTGCGCCCCAAGTTGAAGGCAT
TGTTAAGTGATACGGAGCCGAGAAATGGAAAGGAGTTAattattgaataa
ttaaaaaatatcaaatgttgTCATTATGTCCTTTTTAAATACCGCCACAC
TATCCCAACAGGCTTGTTAGTGTTCAGAGTAGCTAGGAATAAATGTTCAA
ATGTTAATAGTCACTCATTGTCCATGTGAATACAATGTCTTTGTATATTT
TGTTTAGTGATAATTTAGGAGTTTAAATATGTTATTATTTTCCAGAAGAA
AATAGTGGGACGGGTAAGGCTACAAACACTTTACAACAAGATAAAAACAT
TTATTAAAGTAACGGACGCCACGGTTTCTTGTCCTTCCTAAGAAATGTCT
TTGACGAAAGGGATTATTTCTAAAGGCTTGATAATGAGACAGGGTACAGT
ATGAAGCAAAACATAATTTCCCGTTCGCTTATATGCTGTTCATTCTCTCG
GAGGTGTCGCATCTCCTGGCTTAAATCATCTCTGAGACAGGGCGGGTACA
AACATTTCT Run BLAST on NCBI transcript from alignment at sc0003110:12880..14762- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041946 ID=TCONS_00041946|Name=TCONS_00041946|organism=Clytia hemisphaerica|type=transcript|length=1883bp|location=Sequence derived from alignment at sc0003110:12880..14762- (Clytia hemisphaerica)
CGATAATCTTCGATAAGCTTCGATAAGTGTTCGATAGCTTTGATTAATGT
TTGATCTTTATCATATTTTCTCTTTTTTTAGACTTCGATCGAAGAGAACA
AAACATCAAAGACGCAATGGAAAATAATATATAACATTCGGAACATTCAC
CGCGCTTCTCTTCGTTCTGATTAGGTTTGGCTTGTTTTTCTGCAGGCGTT
TCAGTGGCGGCAAATCACTCATTTTTAAAAGGTTGACAAGTGAACAGACG
AACCGTCGTAAGCCGATCGTGAAAAAATGTGATGAATGTGTGAACCACAG
AATTTTCCACGATTTGNCAAATCACTCATTTTTAAAAGGGCGCTTGACAA
GTGAACAGACGAACCGTCGTAAGCCGATCGTGAAAAAATGTGATGAATGT
GTGAACCACAGAATTTTCCACGATTTGGTTCCTCGGTGATTTTAAATTGG
GATAAAAACCTATCGTCAACTCAGGGATGACTGGGGCCTGAAGCTCGATT
TGTTAGAGGAAATTTCCAAATCACGTACAGTAATTATACTCATGTGTGGT
GATAGTCAAGCACGCTATAATGTGACATCTTTCTCTATTTCTTTCTAGTC
TACCGTACGATTCGCATTGGAAAGGAGTGCCGTGGCAATTTAAGGCAATG
CAGAAATCAGAAGATTTATGCTAAGTACGACTGTTGAAGCAATACTCAAC
AGCTTTTACTTGATAGCAATGACTTATCGATGGTTCGTGTGACGGCCGGA
CGGTCATCCTGGATGCCTTATCGTTTCACCGATTTTGAGCCCGACCCCCT
CCCCCCTGATAGGTAAAGCTCTAAAGGAGCGGACCCACAGATTTCTGTAA
AGCCCGAAGGGCTAAATCTCGTGCCTCAAGCTCTTCCAAGCAAGAAATTA
CCTGTTCCAGATGTGAATTTCGCTATCGACACGCTTTGCTCTAAAGGTAC
CGTAGGACGGGGTGAATCGGATACCCGGGGTGAATCGGATAATTTGTTTA
ATCGCCTCTCATACTTCACTGACGATGTCTTTTTCCATTCTGTTTTCAGA
TCACGTTCACTGATCGATCAAGCTATCGGAAAAATATGGCTTCAAAGATC
TGGAACATGTTCTTCGGAAATTGAAGAAGAAAACCTTCTGATTTCCGGAC
CCTTTTTTGAAATGCCGAATAAGCATAAGAAATAATGAAATAATGAAGCG
ACCGTGATTGGAGATTCCTTTGGCATTGTGTTCTACGAAAGCCAGTTGTA
TACAATCTTTGGTTCACTAAACGAAAAACAATGTCTATTCTTCGTATTTT
CATGCTAAAGTTAGGGCGGAAAATTGTTCGCGTTAAAACGCGAATCGCCC
ATTTGCGCCCCAAGTTGAAGGCATTGTTAAGTGATACGGAGCCGAGAAAT
GGAAAGGAGTTAATTATTGAATAATTAAAAAATATCAAATGTTGTCATTA
TGTCCTTTTTAAATACCGCCACACTATCCCAACAGGCTTGTTAGTGTTCA
GAGTAGCTAGGAATAAATGTTCAAATGTTAATAGTCACTCATTGTCCATG
TGAATACAATGTCTTTGTATATTTTGTTTAGTGATAATTTAGGAGTTTAA
ATATGTTATTATTTTCCAGAAGAAAATAGTGGGACGGGTAAGGCTACAAA
CACTTTACAACAAGATAAAAACATTTATTAAAGTAACGGACGCCACGGTT
TCTTGTCCTTCCTAAGAAATGTCTTTGACGAAAGGGATTATTTCTAAAGG
CTTGATAATGAGACAGGGTACAGTATGAAGCAAAACATAATTTCCCGTTC
GCTTATATGCTGTTCATTCTCTCGGAGGTGTCGCATCTCCTGGCTTAAAT
CATCTCTGAGACAGGGCGGGTACAAACATTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041946-exon-sc0003110-1575043694:14589..14762 | TCONS_00041946-exon-sc0003110-1575043694:14589..14762 | Clytia hemisphaerica | exon |
| TCONS_00041946-exon-sc0003110-1575043694:12880..14164 | TCONS_00041946-exon-sc0003110-1575043694:12880..14164 | Clytia hemisphaerica | exon |
| TCONS_00041946-exon-sc0003110-1510915933:14589..14762 | TCONS_00041946-exon-sc0003110-1510915933:14589..14762 | Clytia hemisphaerica | exon |
| TCONS_00041946-exon-sc0003110-1510915933:12880..14164 | TCONS_00041946-exon-sc0003110-1510915933:12880..14164 | Clytia hemisphaerica | exon |
| TCONS_00041946-exon-sc0003110-1491911889:14589..14762 | TCONS_00041946-exon-sc0003110-1491911889:14589..14762 | Clytia hemisphaerica | exon |
| TCONS_00041946-exon-sc0003110-1491911889:12880..14164 | TCONS_00041946-exon-sc0003110-1491911889:12880..14164 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003110 | supercontig | sc0003110:12880..14762 - |
Blast
The following BLAST results are available for this feature:
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