TCONS_00041945 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041945
Unique NameTCONS_00041945
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1056

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041945 ID=TCONS_00041945|Name=TCONS_00041945|organism=Clytia hemisphaerica|type=transcript|length=1056bp
GTTCGATAGCTTTGATTAATGTTTGATCTTTATCATATTTTCTCTTTTTT
TAGACTTCGATCGAAGAGAACAAAACATCAAAGACGCAATGGAAAATAAT
ATATAACATTCGGAACATTCACCGCGCTTCTCTTCGTTCTGATTAGTCTA
CCGTACGATTCGCATTGGAAAGGAGTGCCGTGGCAATTTAAGGCAATGCA
GAAATCAGAAGATTTATGCTAAATCACGTTCACTGATCGATCAAGCTATC
GGAAAAATATGGCTTCAAAGATCTGGAACATGTTCTtcggaaattgaaga
agaaaaccttCTGATTTCCGGACCCTTTTTTGAAATGCCGAATAAGCata
agaaataatgaaataatgaaGCGACCGTGATTGGAGATTCCTTTGGCATT
GTGTTCTACGAAAGCCAGTTGTATACAATCTTTGGTTCACTAAACGAAAA
ACAATGTCTATTCTTCGTATTTTCATGCTAAAGTTAGGGCGGAAAATTGT
TCGCGTTAAAACGCGAATCGCCCATTTGCGCCCCAAGTTGAAGGCATTGT
TAAGTGATACGGAGCCGAGAAATGGAAAGGAGTTAattattgaataatta
aaaaatatcaaatgttgTCATTATGTCCTTTTTAAATACCGCCACACTAT
CCCAACAGGCTTGTTAGTGTTCAGAGTAGCTAGGAATAAATGTTCAAATG
TTAATAGTCACTCATTGTCCATGTGAATACAATGTCTTTGTATATTTTGT
TTAGTGATAATTTAGGAGTTTAAATATGTTATTATTTTCCAGAAGAAAAT
AGTGGGACGGGTAAGGCTACAAACACTTTACAACAAGATAAAAACATTTA
TTAAAGTAACGGACGCCACGGTTTCTTGTCCTTCCTAAGAAATGTCTTTG
ACGAAAGGGATTATTTCTAAAGGCTTGATAATGAGACAGGGTACAGTATG
AAGCAAAACATAATTTCCCGTTCGCTTATATGCTGTTCATTCTCTCGGAG
GTGTCGCATCTCCTGGCTTAAATCATCTCTGAGACAGGGCGGGTACAAAC
ATTTCT
Run BLAST on NCBI

transcript from alignment at sc0003110:12880..14734-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041945 ID=TCONS_00041945|Name=TCONS_00041945|organism=Clytia hemisphaerica|type=transcript|length=1855bp|location=Sequence derived from alignment at sc0003110:12880..14734- (Clytia hemisphaerica)
GTTCGATAGCTTTGATTAATGTTTGATCTTTATCATATTTTCTCTTTTTT
TAGACTTCGATCGAAGAGAACAAAACATCAAAGACGCAATGGAAAATAAT
ATATAACATTCGGAACATTCACCGCGCTTCTCTTCGTTCTGATTAGGTTT
GGCTTGTTTTTCTGCAGGCGTTTCAGTGGCGGCAAATCACTCATTTTTAA
AAGGTTGACAAGTGAACAGACGAACCGTCGTAAGCCGATCGTGAAAAAAT
GTGATGAATGTGTGAACCACAGAATTTTCCACGATTTGNCAAATCACTCA
TTTTTAAAAGGGCGCTTGACAAGTGAACAGACGAACCGTCGTAAGCCGAT
CGTGAAAAAATGTGATGAATGTGTGAACCACAGAATTTTCCACGATTTGG
TTCCTCGGTGATTTTAAATTGGGATAAAAACCTATCGTCAACTCAGGGAT
GACTGGGGCCTGAAGCTCGATTTGTTAGAGGAAATTTCCAAATCACGTAC
AGTAATTATACTCATGTGTGGTGATAGTCAAGCACGCTATAATGTGACAT
CTTTCTCTATTTCTTTCTAGTCTACCGTACGATTCGCATTGGAAAGGAGT
GCCGTGGCAATTTAAGGCAATGCAGAAATCAGAAGATTTATGCTAAGTAC
GACTGTTGAAGCAATACTCAACAGCTTTTACTTGATAGCAATGACTTATC
GATGGTTCGTGTGACGGCCGGACGGTCATCCTGGATGCCTTATCGTTTCA
CCGATTTTGAGCCCGACCCCCTCCCCCCTGATAGGTAAAGCTCTAAAGGA
GCGGACCCACAGATTTCTGTAAAGCCCGAAGGGCTAAATCTCGTGCCTCA
AGCTCTTCCAAGCAAGAAATTACCTGTTCCAGATGTGAATTTCGCTATCG
ACACGCTTTGCTCTAAAGGTACCGTAGGACGGGGTGAATCGGATACCCGG
GGTGAATCGGATAATTTGTTTAATCGCCTCTCATACTTCACTGACGATGT
CTTTTTCCATTCTGTTTTCAGATCACGTTCACTGATCGATCAAGCTATCG
GAAAAATATGGCTTCAAAGATCTGGAACATGTTCTTCGGAAATTGAAGAA
GAAAACCTTCTGATTTCCGGACCCTTTTTTGAAATGCCGAATAAGCATAA
GAAATAATGAAATAATGAAGCGACCGTGATTGGAGATTCCTTTGGCATTG
TGTTCTACGAAAGCCAGTTGTATACAATCTTTGGTTCACTAAACGAAAAA
CAATGTCTATTCTTCGTATTTTCATGCTAAAGTTAGGGCGGAAAATTGTT
CGCGTTAAAACGCGAATCGCCCATTTGCGCCCCAAGTTGAAGGCATTGTT
AAGTGATACGGAGCCGAGAAATGGAAAGGAGTTAATTATTGAATAATTAA
AAAATATCAAATGTTGTCATTATGTCCTTTTTAAATACCGCCACACTATC
CCAACAGGCTTGTTAGTGTTCAGAGTAGCTAGGAATAAATGTTCAAATGT
TAATAGTCACTCATTGTCCATGTGAATACAATGTCTTTGTATATTTTGTT
TAGTGATAATTTAGGAGTTTAAATATGTTATTATTTTCCAGAAGAAAATA
GTGGGACGGGTAAGGCTACAAACACTTTACAACAAGATAAAAACATTTAT
TAAAGTAACGGACGCCACGGTTTCTTGTCCTTCCTAAGAAATGTCTTTGA
CGAAAGGGATTATTTCTAAAGGCTTGATAATGAGACAGGGTACAGTATGA
AGCAAAACATAATTTCCCGTTCGCTTATATGCTGTTCATTCTCTCGGAGG
TGTCGCATCTCCTGGCTTAAATCATCTCTGAGACAGGGCGGGTACAAACA
TTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025838XLOC_025838Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041945-exon-sc0003110-1575043694:14589..14734TCONS_00041945-exon-sc0003110-1575043694:14589..14734Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1575043694:14089..14164TCONS_00041945-exon-sc0003110-1575043694:14089..14164Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1575043694:12880..13713TCONS_00041945-exon-sc0003110-1575043694:12880..13713Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1510915933:14589..14734TCONS_00041945-exon-sc0003110-1510915933:14589..14734Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1510915933:14089..14164TCONS_00041945-exon-sc0003110-1510915933:14089..14164Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1510915933:12880..13713TCONS_00041945-exon-sc0003110-1510915933:12880..13713Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1491911889:14589..14734TCONS_00041945-exon-sc0003110-1491911889:14589..14734Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1491911889:14089..14164TCONS_00041945-exon-sc0003110-1491911889:14089..14164Clytia hemisphaericaexon
TCONS_00041945-exon-sc0003110-1491911889:12880..13713TCONS_00041945-exon-sc0003110-1491911889:12880..13713Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003110supercontigsc0003110:12880..14734 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	2.67133	1.82695	0.936309	1.26629	1.24413	1.75185	1.021	0.195213	0.4733	0.655243	0	0.0083237	0.446528	0.157207	0.434285	0.297087	0	0	0.00970701	0	0.182558	1.14417	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041945 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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