TCONS_00041934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041934
Unique NameTCONS_00041934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length308

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041934 ID=TCONS_00041934|Name=TCONS_00041934|organism=Clytia hemisphaerica|type=transcript|length=308bp
CTCAGCTGCTTGGAAGACAATCAATGAACTGTCAGGGCGCAAGGATCATC
CATCGATCCAGCTCAAAGGAGGATCTCcagagaaaagaaaagagaattgG
CTTGCTCATTTCAAGTCACTGCTTGGAAATTCCCCACTTCTCGGACCTGA
CCAACTTCCTCTGAACCAAGTTTTTGATCTGTTACACATTTCAACAGAGT
CTTTTACTAAAGATGAgcttaaaatagctttaaaatcattttctatcAAT
AAATCTTCCGGTCTAGACAATATACCCACAGTTTTATGGAAAGACCCTAT
TTTTCTTG
Run BLAST on NCBI

protein sequence of TCONS_00041934-protein

>TCONS_00041934-protein ID=TCONS_00041934-protein|Name=TCONS_00041934-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
SAAWKTINELSGRKDHPSIQLKGGSPEKRKENWLAHFKSLLGNSPLLGPD
QLPLNQVFDLLHISTESFTKDELKIALKSFSINKSSGLDNIPTVLWKDPI
FL
Run BLAST on NCBI

transcript from alignment at sc0003105:1..308

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041934 ID=TCONS_00041934|Name=TCONS_00041934|organism=Clytia hemisphaerica|type=transcript|length=308bp|location=Sequence derived from alignment at sc0003105:1..308 (Clytia hemisphaerica)
CAAGAAAAATAGGGTCTTTCCATAAAACTGTGGGTATATTGTCTAGACCG
GAAGATTTATTgatagaaaatgattttaaagctattttaagcTCATCTTT
AGTAAAAGACTCTGTTGAAATGTGTAACAGATCAAAAACTTGGTTCAGAG
GAAGTTGGTCAGGTCCGAGAAGTGGGGAATTTCCAAGCAGTGACTTGAAA
TGAGCAAGCcaattctcttttcttttctctgGAGATCCTCCTTTGAGCTG
GATCGATGGATGATCCTTGCGCCCTGACAGTTCATTGATTGTCTTCCAAG
CAGCTGAG

Coding sequence (CDS) from alignment at sc0003105:1..308

>TCONS_00041934 ID=TCONS_00041934|Name=TCONS_00041934|organism=Clytia hemisphaerica|type=CDS|length=306bp|location=Sequence derived from alignment at sc0003105:1..308 (Clytia hemisphaerica)
AAGAAAAATAGGGTCTTTCCATAAAACTGTGGGTATATTGTCTAGACCGG
AAGATTTATTgatagaaaatgattttaaagctattttaagcTCATCTTTA
GTAAAAGACTCTGTTGAAATGTGTAACAGATCAAAAACTTGGTTCAGAGG
AAGTTGGTCAGGTCCGAGAAGTGGGGAATTTCCAAGCAGTGACTTGAAAT
GAGCAAGCcaattctcttttcttttctctgGAGATCCTCCTTTGAGCTGG
ATCGATGGATGATCCTTGCGCCCTGACAGTTCATTGATTGTCTTCCAAGC
AGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025828XLOC_025828Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041934-proteinTCONS_00041934-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041934-exon-sc0003105-1491911889:1..308TCONS_00041934-exon-sc0003105-1491911889:1..308Clytia hemisphaericaexon
TCONS_00041934-exon-sc0003105-1510915933:1..308TCONS_00041934-exon-sc0003105-1510915933:1..308Clytia hemisphaericaexon
TCONS_00041934-exon-sc0003105-1575043694:1..308TCONS_00041934-exon-sc0003105-1575043694:1..308Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003105supercontigsc0003105:1..308 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.4058	0.816244	3.02747	2.55727	0.917164	1.93491	1.85021	2.47037	1.46746	3.43918	3.02891	1.42942	2.05261	0.515017	0.367798	0.756528	0	0.380736	1.02121	0	0	0.642185	0.324071	3.13465	6.24655	0.621674	0	0.763723	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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