TCONS_00041924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041924
Unique NameTCONS_00041924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041924 ID=TCONS_00041924|Name=TCONS_00041924|organism=Clytia hemisphaerica|type=transcript|length=717bp
CGAATAAAAAGAAGCAGTATACAGTATAAGCTGAATCTGTGGAAGGagga
gaaagaagatggaaattttattattgcatCAACAACAGCAGAGTTGTTGG
GTTATTTCCATAACAGGATTGAAGAATCTCAGAGATTAACTGTAAACATG
GagaatgaaaattatcaaatcattTCTTAGAATTGAATTGGATCCTAGCT
AATAATAGATAATGATCGAATACGAACTTGGTTTGGACTTTTGGTATGCT
TTGGGATGGCAACGAATATCTTTTGGTTATGGCTTGAAACCTGGAAGAAT
TTATCCTCACTTATTCCAGTGGAAAGAAGAACTGTTTGTTTGTattgttt
ttattggctgttGGATGTGGTCTCTGATcgcttgtttgaaaattttccag
gaataaaatggtggaaagttAATTGACATATGATTGAAAGTAAAGTGAAA
CGTGATTGTATTCGATTCTGAAGAATTTAATGAATGTTGCTGGGCATGGA
AATGACTTTCTGcagctctctctctctctgcaCCAGTGACATTGACAGAt
cttgaaaattgtcaaaaatatatactattttttatgattttgctGTAAAT
TTATGCGCTGCAGTTGATACACAATGACaaaatgtttctaaatttttatg
tgaagagttttGTCCTGTATAATCAGTTCAGAGTTAAGGCTGCTAACTCA
TTTTGAATTCCTGAGCT
Run BLAST on NCBI

transcript from alignment at sc0003101:12743..13459

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041924 ID=TCONS_00041924|Name=TCONS_00041924|organism=Clytia hemisphaerica|type=transcript|length=717bp|location=Sequence derived from alignment at sc0003101:12743..13459 (Clytia hemisphaerica)
AGCTCAGGAATTCAAAATGAGTTAGCAGCCTTAACTCTGAACTGATTATA
CAGGACaaaactcttcacataaaaatttagaaacattttGTCATTGTGTA
TCAACTGCAGCGCATAAATTTACagcaaaatcataaaaaatagtatatat
ttttgacaattttcaagaTCTGTCAATGTCACTGGtgcagagagagagag
agctgCAGAAAGTCATTTCCATGCCCAGCAACATTCATTAAATTCTTCAG
AATCGAATACAATCACGTTTCACTTTACTTTCAATCATATGTCAATTaac
tttccaccattttattcctggaaaattttcaaacaagcgATCAGAGACCA
CATCCaacagccaataaaaacaatACAAACAAACAGTTCTTCTTTCCACT
GGAATAAGTGAGGATAAATTCTTCCAGGTTTCAAGCCATAACCAAAAGAT
ATTCGTTGCCATCCCAAAGCATACCAAAAGTCCAAACCAAGTTCGTATTC
GATCATTATCTATTATTAGCTAGGATCCAATTCAATTCTAAGAaatgatt
tgataattttcattctCCATGTTTACAGTTAATCTCTGAGATTCTTCAAT
CCTGTTATGGAAATAACCCAACAACTCTGCTGTTGTTGatgcaataataa
aatttccatcttctttctcctCCTTCCACAGATTCAGCTTATACTGTATA
CTGCTTCTTTTTATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025818XLOC_025818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041924-exon-sc0003101-1491911889:12743..13459TCONS_00041924-exon-sc0003101-1491911889:12743..13459Clytia hemisphaericaexon
TCONS_00041924-exon-sc0003101-1510915933:12743..13459TCONS_00041924-exon-sc0003101-1510915933:12743..13459Clytia hemisphaericaexon
TCONS_00041924-exon-sc0003101-1575043694:12743..13459TCONS_00041924-exon-sc0003101-1575043694:12743..13459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003101supercontigsc0003101:12743..13459 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.658398	0	0.344145	0	3.6061	1.97505	1.17547	1.64503	1.63343	1.32763	0.40031	0.938001	0.693885	0.385886	0.160682	0.171411	0.593686	0.664708	1.01684	0.918345	0.923401	1.63266	0.980687	1.30577	0.38921	1.12204	0.574571	0	0.507582	0.552827
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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