TCONS_00041919 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041919
Unique NameTCONS_00041919
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1975

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041919 ID=TCONS_00041919|Name=TCONS_00041919|organism=Clytia hemisphaerica|type=transcript|length=1975bp
GTTCTGGATGTTTTTTATATCAAACATAGATCGAACAAGGGCCAAGCACG
ATTCATTCTGACCATAAACGAAATTCTTCCAAAGATCTGAACGAACCACA
CCCTCCTACCAGTAAACAAGACATTACAAATTCGTACTCTGATGACACAT
GCCTaaaaaagaaacaacaaaaactgATTAAAAAGTCATCCAGCCCTTAC
ACTAAATCACTAGACGGGTTATCTAGCTTTAAAGAGAAACGAAAAGAATT
AAGTCAAGAGCTAGCGGCTTTTCGTAAGAAATACACCAAGTCGAAATCAC
CaaacaaaacaatcacacaagaCACAGCTATCAATAGAACAGACAAGCTC
GACACCCTCTCTGGTAACATTGATTCAGATTCACCAACAACATCTTCCAA
GACCAATATAGTTGTCGTTTCTCCATGCAAAGCAACCAAATCCTGCTCAC
CACCACCGATGCGATCCAAATCGCCAAACAACTATATGACTTCAACCAAG
AGTAAAGATATGAAATTAGCAAGTGATGATATCACACCATTGCATCCGAG
AAGTGGGACATTCCCACCCGCAGGGGCTGTTGTTTCGTATAGGACGAGAA
CGGATCGGATGGACTTTGAACACCAACGTATGATTCGTACTAAGAAACTG
GCGTCTGAAGCTTTGAAGGGTAAAAAAGTGTTCGTGTGTAACGGCCCTTA
TTCCGTGTTACGTAACGCTCTCCGTAAACGTGGCTGGATcgaaaaatact
ttaaaaacgTTCCCGCGTGTTGTAACGAAGAAAATGACGAAATAAACACC
GAAGAAGGAGAGATGGAAAACGCGAGAAACACCTCAGATGAGAACCATGA
TGAAGTAACTGAGGACGAAGGAGAGCAGGAGATGACTGCGGTGGAGAGTC
AGGGAGATTTTGAGAAAGTATTTTCAAGTGATAGTCAATATGGTATCATG
TCACGGATCGTACGTAATTTTTCACCGACTTTAATTTGGACCTTACGTCG
AGACGATATCATGTTCCGTCTTTTACATAAAGAACAGATCGTCAATCATT
TCACATCTGCATGGACTTTTACCACAAAGACCGGACTATGTGTGAATCTA
CGGAACATGAGCTCCTTCGATTCGAAAGATTGGAAATCGTTTTTCCCGCG
TTGTTATAGACTAGGTTGTGAAGAGGAGAGAGCAGACTTCATAGACGATT
ATAGGCTAACCATGGTGCAAAGTTTATTGAAGATCATCATTGAGAAACAT
GAAGAATGGAGAATGATTGAAATCGATAATGAACAACTGAAACAGGATAT
GCAGAATAAATGTTACGAAGATTGTTTAAAATCGAACGGCTCCAGCCCAG
TCCCTCCAAGGAGAAGTAAACCACGATTGTCACCGACGCAAGTGTCTACC
ATTTTACCTTCTAATGTtatcagcctcgttttgagaaAATGTTACGAGTA
TTTGGATTACCGTTGCCATAGAGATTTGGATGTGATGGACGACTATGGTG
AACGTTGCATGGAGGAATTACATTGGACCACCATCTTGAATAATTATAAT
ATGATCATCGAATCGAACGCCATTATCGCAAACGCCCACCAGCACGTCGA
AGAATGTCATGAACTCCTNGGACCACCATCTTGAATAATTATAATATGAT
CATCGAATCGAACGCCATTATCGCAAACGCCCACCAGCACGTCGAAGAAT
GTCATGAACTCCTCATCGAGATGGAGAAATACTGTCCACAACTCACCATC
GACGGTTTTCTCAATATCTGGATCTTGAAGCCTGGAGCCAAGTCACGTGG
TAGAGGGATTGAGGTGAAGAATAATTTTCATGAGATTTTGAAGACAGTTG
GATCGAGTGTGTCactgaaagaaaataaatgggTTGTTCAAAAGTATATT
GGTGAGTGGATTGCACTTTTCATGTACAAGAATGATGATATTATAGTGCT
CGGAATAGAAAACCATGAACTGCCA
Run BLAST on NCBI

protein sequence of TCONS_00041919-protein

>TCONS_00041919-protein ID=TCONS_00041919-protein|Name=TCONS_00041919-protein|organism=Clytia hemisphaerica|type=polypeptide|length=391bp
MRSKSPNNYMTSTKSKDMKLASDDITPLHPRSGTFPPAGAVVSYRTRTDR
MDFEHQRMIRTKKLASEALKGKKVFVCNGPYSVLRNALRKRGWIEKYFKN
VPACCNEENDEINTEEGEMENARNTSDENHDEVTEDEGEQEMTAVESQGD
FEKVFSSDSQYGIMSRIVRNFSPTLIWTLRRDDIMFRLLHKEQIVNHFTS
AWTFTTKTGLCVNLRNMSSFDSKDWKSFFPRCYRLGCEEERADFIDDYRL
TMVQSLLKIIIEKHEEWRMIEIDNEQLKQDMQNKCYEDCLKSNGSSPVPP
RRSKPRLSPTQVSTILPSNVISLVLRKCYEYLDYRCHRDLDVMDDYGERC
MEELHWTTILNNYNMIIESNAIIANAHQHVEECHELXGPPS
Run BLAST on NCBI

transcript from alignment at sc0003096:6901..12259-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041919 ID=TCONS_00041919|Name=TCONS_00041919|organism=Clytia hemisphaerica|type=transcript|length=5359bp|location=Sequence derived from alignment at sc0003096:6901..12259- (Clytia hemisphaerica)
GTTCTGGATGTTTTTTATATCAAACATAGATCGAACAAGGGCCAAGCACG
ATTCATTCTGACCATAAACGAAATTCTTCCAAAGATCTGAACGAACCACA
CCCTCCTACCAGTAAACAAGACATTACAAATTCGTACTCTGATGACACAT
GCCTAAAAAAGAAACAACAAAAACTGATTAAAAAGTCATCCAGCCCTTAC
ACTAAATCACTAGACGGGTTATCTAGCTTTAAAGAGAAACGAAAAGAATT
AAGTCAAGAGCTAGCGGCTTTTCGTAAGAAATACACCAAGTCGAAATCAC
CAAACAAAACAATCACACAAGACACAGCTATCAATAGAACAGACAAGCTC
GACACCCTCTCTGGTAACATTGATTCAGATTCACCAACAACATCTTCCAA
GACCAATATAGTTGTCGTTTCTCCATGCAAAGCAACCAAATCCTGCTCAC
CACCACCGATGCGATCCAAATCGCCAAACAACTATATGACTTCAACCAAG
AGTAAAGATATGAAATTAGCAAGTGATGATATCACACCATTGCATCCGAG
AAGTGGGACATTCCCACCCGCAGGGGCTGTTGTTTCGTATAGGACGAGAA
CGGATCGGATGGACTTTGAACACCAACGTATGATTCGTACTAAGAAACTG
GCGTCTGAAGCTTTGAAGGTAAAGTGTGATAAAATTATATTAATCAAATT
AAATCATGGAGAACAGTGAAGAGAATACTCCTTTTGATTAATCGATTACT
AGCACTTTTAATTCAGAAGAAATCTGAAGAAATGCAATTCTCATTTTAAA
TAAGACTCCAAAGCTGTTGCGTTCTCGGGGGTGTCGGAAAGTTTGTACGT
AGGAAAGCAGACTTTTATGGTAGAGCAGTTATTCATAAAAAGAAAATGAA
AAGATGTTACTTCGTAAAAAATTGTCCTCTCCTACACAACCGACAACCCT
GAGAACACTACTCAGAGTCTTTTATAATCTGTTTAGTAATATCATGCTAG
ACTTTATCTAAAAACACACGCATCTAAGACTATGTTCAGACGTTACGGTT
TCGTGTCGCTCCGGTATGGTTTCCGTTACGCATCGAGAGTATTCATATTG
GTTTCGGAACGTTTTGGAGCAAGAAAACGGAGCAGCTCCGTTCCGATGAA
AAAAGTGGAGCGAAACCGTTTCGATCCGTTTTGCTTTGTAACGTTTTTTT
TTACGTTTTGAATTTTGACGTTCACACTTGTTTTCGGAACCGTTCCACTT
CGAAACGATACGAAACCGTAACGTCTGAACATGGTCTAAGAATTAAGAGT
GAAACCATTTTCCTCAAACCCCATTTTATGCAAACTAGGCTGAAAATATG
TCTTAAGGTTTATGACTGCGATTTAGAATGCCCAGAGACCTTGTTGAAAT
ACTTATACACTTTGTAATAGCCTGTTTCATCGTCTTATACGATTGTTGAA
CCTTATGAGACAGACACACGGGACTACAGTCTAGTATTTCATACGAATTT
GCTGCTGCTCTCAGATCAATGTGTCGGTTCGATAATAAACGTTGAAATTA
GAAATGCTATCAAGCTATTTACAATTTTGTTCAAACCACTGCAAACCATG
ATATTTTTTTGGCTTGTTCTTTTTCAGGGTAAAAAAGTGTTCGTGTGTAA
CGGCCCTTATTCCGTGTTACGTAACGCTCTCCGTAAACGTGGCTGGATCG
AAAAATACTTTAAAAACGTTCCCGCGTGTTGTAACGAAGAAAATGACGAA
ATAAACACCGAAGAAGGAGAGATGGAAAACGCGAGAAACACCTCAGATGA
GAACCATGATGAAGTAACTGAGGACGAAGGAGAGCAGGAGATGACTGCGG
TGGAGAGTCAGGGAGATTTTGAGAAAGTATTTTCAAGTGATAGTCAATAT
GGTATCATGTCACGGATCGTACGTAATTTTTCACCGACTTTAATTTGGAC
CTTACGTCGAGACGATATCATGTTCCGTCTTTTACATAAAGAACAGATCG
TCAATCATTTCACATCTGCATGGACTTTTACCACAAAGACCGGACTATGT
GTGAATCTACGGAACATGAGCTCCTTCGATTCGAAAGATTGGAAATCGTT
TTTCCCGCGTTGTTATAGACTAGGTTGTGAAGAGGAGAGAGCAGACTTCA
TAGACGATTATAGGCTAACCATGGTGCAAAGTTTATTGAAGATCATCATT
GAGAAACATGAAGAATGGAGAATGATTGAAATCGATAATGAACAACTGAA
ACAGGATATGCAGAATAAATGTTACGAAGATTGTTTAAAATCGAACGGCT
CCAGCCCAGTCCCTCCAAGGAGAAGTAGTAAGTGGATGTCAACTTTCGTG
AAAGAAATTGTTCATTAAGAAGTTCATACCTGCTTTTTTAAATGAGAGGG
ATGTTTTAACTAAGTTCATTTTTCAACTAGCTTTCTTTAGCTATTTTCTT
TTCAATTTAAAAGGGAAGATGCGCAAGTGTGAGCATAAACTATAAAATGT
AGATTACTGCTGTGACGTAGAAAAATATCATATACTAAAAACACAGGGTA
ATAATACTTTGTTCGTTTGTATAAGTTTTGGCCGATTTTTTTATCTTTGA
TCATGCAGACACAGGTCGAATTCGTCAGTCAAATAAATTCTCTGCAGCGT
TACAAATGACAGGATGTTTTACACATTCATGTAAATTTCAATTTCATTTT
ACAGAACCACGATTGTCACCGACGCAAGTGTCTACCATTTTACCTTCTAA
TGTTATCAGCCTCGTTTTGAGAAAATGTTACGAGTATTTGGATTACCGTT
GCCATAGAGATTTGGATGTGATGGACGACTATGGTGAACGTTGCATGGAG
GAATTACATTGGACCACCATCTTGAATAATTATAATATGATCATCGAGTA
AGTTCTCACTCGTGGATTTTCTGCAACATGTAGCATAACCAGGCCCGGTG
GCAGCGGGGAGACTGGAGAGACTTCAACATCCCCACTTTTGAGCAAATGA
GATTTTTTCTCTCAAACTCCTAGCGAATTTTATCTCATTTTGAGCCTGCA
GCCTCCCCACTTTAACAGTTGTTCCACCGGATCCCGACAACAATGCTCTA
GATGTCTTTGCACAGATATCTTATATAAAACACTAGATGGAGCTACTCCA
CGGTGTTCTAAATCTACAGGCCTTGCAAGCGTACATCGGCTTTGATTTTG
TGGGGCTGAATTTTTCGAAGTCTTTGAAGATTTAGAACACCATGAGTTAC
TCTCTCACAAAAACCACCGCCACAAAAATGTTTTAATAACGCTGAGAATA
AAGCAACTTAACACCTCCCTCCGGAAAATCTAATTAAAGTGGAAGTACTA
ACATCGCCATTCTCATGAGAGTTTAGAGTTCTATACAACGTTAAAATACT
CAAAATTGTCAATCTATTATTTTGGTAAGTGATTGTCGATAGAGCTTGCC
CATTTTTTTTCAAATTCCAAAATTNTATTATTTTGGTAAGTGATTGTCGA
TAGAGCTTGCCCATTTTTTTTCAAATTCCAAAATTATCCGTCGTCCTTGC
TGTTTGTTAAGTACAAATAGGAAAATGCAGGGAAAAAAAGAATTGCTTCT
TCTAGTATCTTGTTGTCCATGAAAACAGCAATGATTTGGTTAGTCCACAC
ATCTCACCTAAAGCACGTTTGAAATTTTAAGTTCCATGTAGGGTTTAGAG
TTTTTGAGGTTTAGGATTTAAATTCACTCCTGTATAACTTAAGCAACCTG
CGTGGTATTCATTCAAACGCGACATTTACCCCTAATGTTTGTAAGAAGCA
GTGTTCAAAATAAACGTTTAACGGTGCTACATCATCAAAAGTATTCAATA
AAGCGTAACTCTAGCGCAGGGTGCGTAACAATCTTGGGGCAGGATGTGTG
ATCAAAATCTTCCTCTTCTTTTTCCTAGATCGAACGCCATTATCGCAAAC
GCCCACCAGCACGTCGAAGAATGTCATGAACTCCTNGGACCACCATCTTG
AATAATTATAATATGATCATCGAGTAAGTTCTCACTCGTGGATTTTCTGC
AACATGTAGCATAACCAGGCCCGGTGGCAGCGGGGAGACTGGAGAGACTT
CAACATCCCCACTTTTGAGCAAATGAGATTTTATCTCTCAAAGTCCTAGC
GAATTTTATCTCATTTTGAGCCTGCAGCCTCCCCACTTTAACAGTTGTTC
CACCGGATCCGATAACAATGCTCTAGATATCTTTGCACAGATATCTTATA
TAAAACACTAGATGGAGCTACTCCACGGTGTTCTAAATCTACAGGCTTTG
CAAGCGTACAGCGGCTTTGATTTTGTGGGGCTGAATTTTTCGAAGTCTTT
GCAGATTTAGAACACCATGAGTTACTCTCTCACAAAAACCACCGCCATAA
AAATGTTTTAATAACGCTGAGAATAAAGCAACTTCACACCTCCCTCCAGA
AAATCTAATTAAAGTGGAAGTACTAACATCGCCATTCTCATGAGAGTTTA
GAGTTCTATACAACGTTAAAATACTCAAAATTGTCAATCTATTATTTTGG
TAAGTGATTGTCGATAGAGNAAAATACTCAAAATTGTCAATCTATTATTT
TGGTAAGTGATTGTCGATAGAGCTTGCCCATTTTTTTTCAAATTCCAAAA
TTATCCGTCGTCCTTGCTGTTTGTTAAGTACAAATAGGAAAATGCAGGGA
AAAAAAGAATTGCCTCTTCTAGTATCTTGTTGTCCATGAAAACAGCAATG
ATTTGGTTAGTCCACACATCTCACCTAAAGCACGTTTGAAATTTTAAGTT
CCATGTAGGGTTTTGAGTTTTTGAGGTTTAGGATTTAAATTCATTCCCGT
ATAAGCAACCTGCGTGGTATTCATTCAAACGCGACATTTACCCCTAATGT
TTGTAAGAAGCAGTCTTCAAAATAAACGTTTAACGGTGCTACATCATCAA
AAGTATTCAATAAAGCGTAACTCTAGCGCAGGGTGCGTAACAATCTTGGG
GCAGGGTGTGTGATCAAAATCTTCCTCTTCTTTTTCCTAGATCGAACGCC
ATTATCGCAAACGCCCACCAGCACGTCGAAGAATGTCATGAACTCCTCAT
CGAGATGGAGAAATACTGTCCACAACTCACCATCGACGGTTTTCTCAATA
TCTGGATCTTGAAGCCTGGAGCCAAGTCACGTGGTAGAGGGATTGAGGTG
AAGAATAATTTTCATGAGATTTTGAAGACAGTTGGATCGAGTGTGTCACT
GAAAGAAAATAAATGGGTTGTTCAAAAGTATATTGGTGAGTGGATTGCAC
TTTTCATGTACAAGAATGATGATATTATAGTGCTCGGAATAGAAAACCAT
GAACTGCCA

Coding sequence (CDS) from alignment at sc0003096:6901..12259-

>TCONS_00041919 ID=TCONS_00041919|Name=TCONS_00041919|organism=Clytia hemisphaerica|type=CDS|length=4704bp|location=Sequence derived from alignment at sc0003096:6901..12259- (Clytia hemisphaerica)
ATCGAACGCCATTATCGCAAACGCCCACCAGCACGTCGAAGAATGTCATG
AACTCCTNGGACCACCATCTTGAAACCACGATTGTCACCGACGCAAGTGT
CTACCATTTTACCTTCTAATGTTATCAGCCTCGTTTTGAGAAAATGTTAC
GAGTATTTGGATTACCGTTGCCATAGAGATTTGGATGTGATGGACGACTA
TGGTGAACGTTGCATGGAGGAATTACATTGGACCACCATCTTGAATAATT
ATAATATGATCATCGAGGTAAAAAAGTGTTCGTGTGTAACGGCCCTTATT
CCGTGTTACGTAACGCTCTCCGTAAACGTGGCTGGATCGAAAAATACTTT
AAAAACGTTCCCGCGTGTTGTAACGAAGAAAATGACGAAATAAACACCGA
AGAAGGAGAGATGGAAAACGCGAGAAACACCTCAGATGAGAACCATGATG
AAGTAACTGAGGACGAAGGAGAGCAGGAGATGACTGCGGTGGAGAGTCAG
GGAGATTTTGAGAAAGTATTTTCAAGTGATAGTCAATATGGTATCATGTC
ACGGATCGTACGTAATTTTTCACCGACTTTAATTTGGACCTTACGTCGAG
ACGATATCATGTTCCGTCTTTTACATAAAGAACAGATCGTCAATCATTTC
ACATCTGCATGGACTTTTACCACAAAGACCGGACTATGTGTGAATCTACG
GAACATGAGCTCCTTCGATTCGAAAGATTGGAAATCGTTTTTCCCGCGTT
GTTATAGACTAGGTTGTGAAGAGGAGAGAGCAGACTTCATAGACGATTAT
AGGCTAACCATGGTGCAAAGTTTATTGAAGATCATCATTGAGAAACATGA
AGAATGGAGAATGATTGAAATCGATAATGAACAACTGAAACAGGATATGC
AGAATAAATGTTACGAAGATTGTTTAAAATCGAACGGCTCCAGCCCAGTC
CCTCCAAGGAGAAGTAATGCGATCCAAATCGCCAAACAACTATATGACTT
CAACCAAGAGTAAAGATATGAAATTAGCAAGTGATGATATCACACCATTG
CATCCGAGAAGTGGGACATTCCCACCCGCAGGGGCTGTTGTTTCGTATAG
GACGAGAACGGATCGGATGGACTTTGAACACCAACGTATGATTCGTACTA
AGAAACTGGCGTCTGAAGCTTTGAAGATCGAACGCCATTATCGCAAACGC
CCACCAGCACGTCGAAGAATGTCATGAACTCCTNGGACCACCATCTTGAA
ACCACGATTGTCACCGACGCAAGTGTCTACCATTTTACCTTCTAATGTTA
TCAGCCTCGTTTTGAGAAAATGTTACGAGTATTTGGATTACCGTTGCCAT
AGAGATTTGGATGTGATGGACGACTATGGTGAACGTTGCATGGAGGAATT
ACATTGGACCACCATCTTGAATAATTATAATATGATCATCGAGGTAAAAA
AGTGTTCGTGTGTAACGGCCCTTATTCCGTGTTACGTAACGCTCTCCGTA
AACGTGGCTGGATCGAAAAATACTTTAAAAACGTTCCCGCGTGTTGTAAC
GAAGAAAATGACGAAATAAACACCGAAGAAGGAGAGATGGAAAACGCGAG
AAACACCTCAGATGAGAACCATGATGAAGTAACTGAGGACGAAGGAGAGC
AGGAGATGACTGCGGTGGAGAGTCAGGGAGATTTTGAGAAAGTATTTTCA
AGTGATAGTCAATATGGTATCATGTCACGGATCGTACGTAATTTTTCACC
GACTTTAATTTGGACCTTACGTCGAGACGATATCATGTTCCGTCTTTTAC
ATAAAGAACAGATCGTCAATCATTTCACATCTGCATGGACTTTTACCACA
AAGACCGGACTATGTGTGAATCTACGGAACATGAGCTCCTTCGATTCGAA
AGATTGGAAATCGTTTTTCCCGCGTTGTTATAGACTAGGTTGTGAAGAGG
AGAGAGCAGACTTCATAGACGATTATAGGCTAACCATGGTGCAAAGTTTA
TTGAAGATCATCATTGAGAAACATGAAGAATGGAGAATGATTGAAATCGA
TAATGAACAACTGAAACAGGATATGCAGAATAAATGTTACGAAGATTGTT
TAAAATCGAACGGCTCCAGCCCAGTCCCTCCAAGGAGAAGTAATGCGATC
CAAATCGCCAAACAACTATATGACTTCAACCAAGAGTAAAGATATGAAAT
TAGCAAGTGATGATATCACACCATTGCATCCGAGAAGTGGGACATTCCCA
CCCGCAGGGGCTGTTGTTTCGTATAGGACGAGAACGGATCGGATGGACTT
TGAACACCAACGTATGATTCGTACTAAGAAACTGGCGTCTGAAGCTTTGA
AGATCGAACGCCATTATCGCAAACGCCCACCAGCACGTCGAAGAATGTCA
TGAACTCCTNGGACCACCATCTTGAAACCACGATTGTCACCGACGCAAGT
GTCTACCATTTTACCTTCTAATGTTATCAGCCTCGTTTTGAGAAAATGTT
ACGAGTATTTGGATTACCGTTGCCATAGAGATTTGGATGTGATGGACGAC
TATGGTGAACGTTGCATGGAGGAATTACATTGGACCACCATCTTGAATAA
TTATAATATGATCATCGAGGTAAAAAAGTGTTCGTGTGTAACGGCCCTTA
TTCCGTGTTACGTAACGCTCTCCGTAAACGTGGCTGGATCGAAAAATACT
TTAAAAACGTTCCCGCGTGTTGTAACGAAGAAAATGACGAAATAAACACC
GAAGAAGGAGAGATGGAAAACGCGAGAAACACCTCAGATGAGAACCATGA
TGAAGTAACTGAGGACGAAGGAGAGCAGGAGATGACTGCGGTGGAGAGTC
AGGGAGATTTTGAGAAAGTATTTTCAAGTGATAGTCAATATGGTATCATG
TCACGGATCGTACGTAATTTTTCACCGACTTTAATTTGGACCTTACGTCG
AGACGATATCATGTTCCGTCTTTTACATAAAGAACAGATCGTCAATCATT
TCACATCTGCATGGACTTTTACCACAAAGACCGGACTATGTGTGAATCTA
CGGAACATGAGCTCCTTCGATTCGAAAGATTGGAAATCGTTTTTCCCGCG
TTGTTATAGACTAGGTTGTGAAGAGGAGAGAGCAGACTTCATAGACGATT
ATAGGCTAACCATGGTGCAAAGTTTATTGAAGATCATCATTGAGAAACAT
GAAGAATGGAGAATGATTGAAATCGATAATGAACAACTGAAACAGGATAT
GCAGAATAAATGTTACGAAGATTGTTTAAAATCGAACGGCTCCAGCCCAG
TCCCTCCAAGGAGAAGTAATGCGATCCAAATCGCCAAACAACTATATGAC
TTCAACCAAGAGTAAAGATATGAAATTAGCAAGTGATGATATCACACCAT
TGCATCCGAGAAGTGGGACATTCCCACCCGCAGGGGCTGTTGTTTCGTAT
AGGACGAGAACGGATCGGATGGACTTTGAACACCAACGTATGATTCGTAC
TAAGAAACTGGCGTCTGAAGCTTTGAAGATCGAACGCCATTATCGCAAAC
GCCCACCAGCACGTCGAAGAATGTCATGAACTCCTNGGACCACCATCTTG
AAACCACGATTGTCACCGACGCAAGTGTCTACCATTTTACCTTCTAATGT
TATCAGCCTCGTTTTGAGAAAATGTTACGAGTATTTGGATTACCGTTGCC
ATAGAGATTTGGATGTGATGGACGACTATGGTGAACGTTGCATGGAGGAA
TTACATTGGACCACCATCTTGAATAATTATAATATGATCATCGAGGTAAA
AAAGTGTTCGTGTGTAACGGCCCTTATTCCGTGTTACGTAACGCTCTCCG
TAAACGTGGCTGGATCGAAAAATACTTTAAAAACGTTCCCGCGTGTTGTA
ACGAAGAAAATGACGAAATAAACACCGAAGAAGGAGAGATGGAAAACGCG
AGAAACACCTCAGATGAGAACCATGATGAAGTAACTGAGGACGAAGGAGA
GCAGGAGATGACTGCGGTGGAGAGTCAGGGAGATTTTGAGAAAGTATTTT
CAAGTGATAGTCAATATGGTATCATGTCACGGATCGTACGTAATTTTTCA
CCGACTTTAATTTGGACCTTACGTCGAGACGATATCATGTTCCGTCTTTT
ACATAAAGAACAGATCGTCAATCATTTCACATCTGCATGGACTTTTACCA
CAAAGACCGGACTATGTGTGAATCTACGGAACATGAGCTCCTTCGATTCG
AAAGATTGGAAATCGTTTTTCCCGCGTTGTTATAGACTAGGTTGTGAAGA
GGAGAGAGCAGACTTCATAGACGATTATAGGCTAACCATGGTGCAAAGTT
TATTGAAGATCATCATTGAGAAACATGAAGAATGGAGAATGATTGAAATC
GATAATGAACAACTGAAACAGGATATGCAGAATAAATGTTACGAAGATTG
TTTAAAATCGAACGGCTCCAGCCCAGTCCCTCCAAGGAGAAGTAATGCGA
TCCAAATCGCCAAACAACTATATGACTTCAACCAAGAGTAAAGATATGAA
ATTAGCAAGTGATGATATCACACCATTGCATCCGAGAAGTGGGACATTCC
CACCCGCAGGGGCTGTTGTTTCGTATAGGACGAGAACGGATCGGATGGAC
TTTGAACACCAACGTATGATTCGTACTAAGAAACTGGCGTCTGAAGCTTT
GAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025814XLOC_025814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041919-exon-sc0003096-1575043694:11592..12259TCONS_00041919-exon-sc0003096-1575043694:11592..12259Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1575043694:9933..10632TCONS_00041919-exon-sc0003096-1575043694:9933..10632Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1575043694:9363..9555TCONS_00041919-exon-sc0003096-1575043694:9363..9555Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1575043694:8237..8331TCONS_00041919-exon-sc0003096-1575043694:8237..8331Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1575043694:6901..7219TCONS_00041919-exon-sc0003096-1575043694:6901..7219Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1510915933:11592..12259TCONS_00041919-exon-sc0003096-1510915933:11592..12259Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1510915933:9933..10632TCONS_00041919-exon-sc0003096-1510915933:9933..10632Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1510915933:9363..9555TCONS_00041919-exon-sc0003096-1510915933:9363..9555Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1510915933:8237..8331TCONS_00041919-exon-sc0003096-1510915933:8237..8331Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1510915933:6901..7219TCONS_00041919-exon-sc0003096-1510915933:6901..7219Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1491911889:11592..12259TCONS_00041919-exon-sc0003096-1491911889:11592..12259Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1491911889:9933..10632TCONS_00041919-exon-sc0003096-1491911889:9933..10632Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1491911889:9363..9555TCONS_00041919-exon-sc0003096-1491911889:9363..9555Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1491911889:8237..8331TCONS_00041919-exon-sc0003096-1491911889:8237..8331Clytia hemisphaericaexon
TCONS_00041919-exon-sc0003096-1491911889:6901..7219TCONS_00041919-exon-sc0003096-1491911889:6901..7219Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041919-proteinTCONS_00041919-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003096supercontigsc0003096:6901..12259 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.449491	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
[Close]
BLAST of TCONS_00041919 vs. Swiss-Prot (Human)
Match: TTLL8 (Protein monoglycylase TTLL8 OS=Homo sapiens GN=TTLL8 PE=2 SV=4)

HSP 1 Score: 140.584 bits (353), Expect = 1.224e-34
Identity = 96/331 (29.00%), Postives = 158/331 (47.73%), Query Frame = 3 
Query:  639 TKKLASEALKGKKVFVCNGPYSVLRNALRKRGWIEKYFKNVPACCXXXXXXXXXXXXXXXXARNTSDE----NHDEVTEDEGEQEMTAVESQGDFEKVFSSDSQYGIMSRIVRNFSPTLIWTLRRDDIMFRLLHKEQIVNHFTSAWTFTTKTGLCVNLRNMXXXXXXXXXXXXPRCYRLGCEEERADFIDDYRLTMVQSLLKIIIEKHEEWRMIEIDNEQLKQDMQNKCYEDCLKSNGXXXXXXXXXXXXXXXTQVSTILPSNVISLVLRKCYEYLDYRCHRDLDVMDDYGERCMEELHWTTILNNYNMIIESNAIIANAHQHVEECHELL 1619
             ++L  +A+K KK+F   G Y V+R ALR++GW+EK F  +P                     +  DE    N D   + +  QEM         EK   +D+ + +MSR+V+N  P L+WT++RD I +  L  +Q++NH+    +FTTK GLCVN+R++  +   +  SFFPRCY L  E E+ +F++D+R TM  S+LK ++      R     +    +D + +     L S   +     + +           LP  ++ +  + C  YL    H D+D   D  E  + E  W  +   Y  ++  +A I+N+  +  +C  LL
Sbjct:   44 ARQLTEKAIKEKKIFSIYGHYPVVRAALRRKGWVEKKFHFLPKVIP-----------------DVEDEGARVNDDTCAKVKENQEMA-------LEK---TDNIHDVMSRLVKNEMPYLLWTIKRDIIDYHSLTYDQMLNHYAKTASFTTKIGLCVNMRSLPWYVPANPDSFFPRCYSLCTESEQQEFLEDFRRTMASSILKWVVSHQSCSR----SSRSKPRDQREEAGSSDLSSRQDAENAEAKLRG----------LPGQLVDIACKVCQAYLGQLEHEDIDTSADAVED-LTEAEWEDLTQQYYSLVHGDAFISNSRNYFSQCQALL 332
The following BLAST results are available for this feature:
BLAST of TCONS_00041919 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTLL81.224e-3429.00Protein monoglycylase TTLL8 OS=Homo sapiens GN=TTL... [more]
back to top