|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041915 ID=TCONS_00041915|Name=TCONS_00041915|organism=Clytia hemisphaerica|type=transcript|length=366bp
ATAAAATTGCTCGGTTAAAGagggATTATTCGAACGAGCAAAGGAGACAG
CCGTAAAGATTTCCTACTGTAATTTTACATTTGCTGAATAAAGACTTATG
GGACATTACTTTTTGTGCAAAGCATTAAAATTGTATTCAAATGACCTGGA
ATGTCAAAGCTTTAGATTGGAGGAAATCAACACCATTGGACAACTCACTA
ACTATTACGGATTAAAGGACATTGCGGAGAGGACAACAAACAAGTGAAAA
TAGTTTTTGTAGAAATAAATTTGATCTAAAATCTTTAACTTTCCTGTCTG
AATTAGCCTTTCTTTTGTTAAGAAAGTTGGTTTCTCTCGGGCTTCTCTAA
AACGTAACGGTCTACC Run BLAST on NCBI transcript from alignment at sc0003095:8498..9728+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041915 ID=TCONS_00041915|Name=TCONS_00041915|organism=Clytia hemisphaerica|type=transcript|length=1231bp|location=Sequence derived from alignment at sc0003095:8498..9728+ (Clytia hemisphaerica)
ATAAAATTGCTCGGTTAAAGaggtatttcaaattttaatatacAGTATCC
TTTTTTATCTTTGGATAAGTTGAATTTCTATGTTACTTGAATGTCTTGAA
AATAGAAGATATATTGATTAGGTGAGTTTTCAACTTGtattcatattttt
cttctttagggATTATTCGAACGAGCAAAGGAGACAGCCGTAAAGATTTC
CTACTGTAATTTTACATTTGCTGAATAAAGACTTATGGGACATTACTTTT
TGTGCAAAGCATTAAAATTGTATTCAAATGACCTGGAATGTCAAAGGTAC
GCACTATGATTTTATTATCCATATTTCACCTTTACATgttatttctttta
taagcataacgtttataagcatatgcaggctcagtttttcgtacctaaac
aatggctctattatTTGAGAACAATACAATgataagcataatgcgagcct
gatgtaggggtagatacttgcttataaaaaaaaacatgtattacaTTTGC
TTCATAAGGGACCGGTGTAGGACATTGCTAACCATTCGAATTTGCAAAta
atatacccctgtctcacagccccggtggaatttttttcctcagtgggatA
AAATTTCCTGTCAAAATTCaagtgggaataaaaattatattgtttcaAGT
TCCAAGGTTAAGAACTCCATtcgggatggttttggagtgcagtttttaaa
cattaattttcggatggggatgaaatcataatcaattctcagtggggctg
aaattcccggTAATTGTTCTACCAGGCACCAGGGACGgaatttttgccaa
atattccagtggggctgggatcacagcgggtctatgacacaggggtttaa
taatgaatgaaaattaatttaacCTTGTAAATTTTGAGTTTATTTCAATA
ATATTGCTTGTAATCTTTGTTGTGATAGGATGGCACAACATAAAGCACTT
TCTGTAAATgcaattttaaagtgctgaacAATTTCAATAAATAGTTCTAA
TTTTTGCTTTGGTCTTTCTTACAGCTTTAGATTGGAGGAAATCAACACCA
TTGGACAACTCACTAACTATTACGGATTAAAGGACATTGCGGAGAGGACA
ACAAACAAGTGAAAATAGTTTTTGTAGAAATAAATTTGATCTAAAATCTT
TAACTTTCCTGTCTGAATTAGCCTTTCTTTTGTTAAGAAAGTTGGTTTCT
CTCGGGCTTCTCTAAAACGTAACGGTCTACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041915-exon-sc0003095-1491911889:8498..8519 | TCONS_00041915-exon-sc0003095-1491911889:8498..8519 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1510915933:8498..8519 | TCONS_00041915-exon-sc0003095-1510915933:8498..8519 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1575043694:8498..8519 | TCONS_00041915-exon-sc0003095-1575043694:8498..8519 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1491911889:8657..8793 | TCONS_00041915-exon-sc0003095-1491911889:8657..8793 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1510915933:8657..8793 | TCONS_00041915-exon-sc0003095-1510915933:8657..8793 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1575043694:8657..8793 | TCONS_00041915-exon-sc0003095-1575043694:8657..8793 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1491911889:9522..9728 | TCONS_00041915-exon-sc0003095-1491911889:9522..9728 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1510915933:9522..9728 | TCONS_00041915-exon-sc0003095-1510915933:9522..9728 | Clytia hemisphaerica | exon |
| TCONS_00041915-exon-sc0003095-1575043694:9522..9728 | TCONS_00041915-exon-sc0003095-1575043694:9522..9728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003095 | supercontig | sc0003095:8498..9728 + |
Blast
The following BLAST results are available for this feature:
|
