TCONS_00041912 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041912
Unique NameTCONS_00041912
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length856

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041912 ID=TCONS_00041912|Name=TCONS_00041912|organism=Clytia hemisphaerica|type=transcript|length=856bp
CGACGTGCCACAAATCAAGTATCGAAAACGCCAACACTTACACCAAATCT
CCCAACATGGAGAGCCAATCAGCACGTACTTGAGCAGACTTGAGAAACTT
GCTCAAAATCTTAATGTTCCCGAGCCAACAAAACTTGATATCATGATTGC
TGGACTAGATTCTGGATACAGGAACTACTTACAAATGAAGCAACCAGAGA
CGTACCGTGAGGCAACCCATGCACTTTTGCTGAAAGAGGCAGTTGATCCA
CCAATGGAGTATTTAATTGAAGATTTAATGAACCAAATAAAGCTTATTAA
AACCGATAAAGAACAGGGCGATTGTGAACAATCGGTAGTTTGTTTCATAT
GCAAAGAGGAAGGACACATTTCCAGATATTGCCCCATTAAATATGATTaa
ctgtgaaaaaaaaaactattgaactaaattgattgaaaaaaagacCATTA
TATTCTAAGAAAAGTATTTTACCGTAATTGAATCTTATTTACTTTGTCAC
TATTTGTCATTAATATATATATTAAGACATTATATTTAACATATTATTTA
GCATAAAACGAAGACAACAGGAATGAACATTAATTTGGCATTGATTGACA
TCCACtataattaattttgaaattgatgcaaaatgtctttagaaaaattg
acaGTTAAACTTGATGTTTATAATGATGGAACCAAGATGATTCGAAATTA
ACAAGGGGGATAACGCTTTGATACTGCCTTGTAATTTCACAAGCTGAACC
GAACATATCGACATAAATAAAGAGCATATAAACCAACGTTCCAGTGATGA
GGACATCACTATTATTTACCACCCGGATGTCGTGTAAAAGGACTGATTtg
acttaa
Run BLAST on NCBI

protein sequence of TCONS_00041912-protein

>TCONS_00041912-protein ID=TCONS_00041912-protein|Name=TCONS_00041912-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
DVPQIKYRKRQHLHQISQHGEPISTYLSRLEKLAQNLNVPEPTKLDIMIA
GLDSGYRNYLQMKQPETYREATHALLLKEAVDPPMEYLIEDLMNQIKLIK
TDKEQGDCEQSVVCFICKEEGHISRYCPIKYD
Run BLAST on NCBI

transcript from alignment at sc0003089:9771..10747-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041912 ID=TCONS_00041912|Name=TCONS_00041912|organism=Clytia hemisphaerica|type=transcript|length=977bp|location=Sequence derived from alignment at sc0003089:9771..10747- (Clytia hemisphaerica)
CGACGTGCCACAAATCAAGTATCGAAAACGCCAACACTTACACCAAATCT
CCCAACATGGAGAGCCAATCAGCACGTACTTGAGCAGACTTGAGAAACTT
GCTCAAAATCTTAATGTTCCCGAGCCAACAAAACTTGATATCATGATTGC
TGGACTAGATTCTGGATACAGGAACTACTTACAAATGAAGCAACCAGAGA
CGTACCGTGAGGCAACCCATGCACTTTTGCTGAAAGAGGCAGTTGATCCA
CCAATGGAGTATTTAATTGAAGATTTAATGAACCAAATAAAGCTTATTAA
AACCGATAAAGAACAGGGCGATTGTGAACAATCGGTAGTTTGTTTCATAT
GCAAAGAGGAAGGACACATTTCCAGATATTGCCCCATTAAATATGATTAA
CTGTGAAAAAAAAAACTATTGAACTAAATTGATTGAAAAAAAGACCATTA
TATTCTAAGAAAAGTATTTTACCGTAATTGAATCTTATTTACTTTGTCAC
TATTTGTCATTAATATATATATTAAGACATTATATTTAACATATTATTTA
GCATAAAACGAAGACAACAGGAATGAACATTAATTTGGCATTGATTGACA
TCCACTATAATTAATTTTGAAATTGATGCAAAATGTCTTTAGAAAAATTG
ACAGTTAAACTTGATGTTTATAATGATGGAACCAAGATGATTCGAAATTA
ACAAGGGGGATAACGCTTTGATACTGCCTTGTAATTTCACAAGCTGAACC
GAACATATCGACATAAATAACAAGCATATAAACCAACGTTCCAGTGATGA
GGACATCACTATTATTTACCACCCGGATGTCGTGTAAAAGGACTGATTTA
ACTTAAAGAATGCTTGAATNCGAACATATCGACATAAATAAAGAGCATAT
AAACCAACGTTCCAGTGATGAGGACATCACTATTATTTACCACCCGGATG
TCGTGTAAAAGGACTGATTTGACTTAA

Coding sequence (CDS) from alignment at sc0003089:9771..10747-

>TCONS_00041912 ID=TCONS_00041912|Name=TCONS_00041912|organism=Clytia hemisphaerica|type=CDS|length=399bp|location=Sequence derived from alignment at sc0003089:9771..10747- (Clytia hemisphaerica)
GACGTGCCACAAATCAAGTATCGAAAACGCCAACACTTACACCAAATCTC
CCAACATGGAGAGCCAATCAGCACGTACTTGAGCAGACTTGAGAAACTTG
CTCAAAATCTTAATGTTCCCGAGCCAACAAAACTTGATATCATGATTGCT
GGACTAGATTCTGGATACAGGAACTACTTACAAATGAAGCAACCAGAGAC
GTACCGTGAGGCAACCCATGCACTTTTGCTGAAAGAGGCAGTTGATCCAC
CAATGGAGTATTTAATTGAAGATTTAATGAACCAAATAAAGCTTATTAAA
ACCGATAAAGAACAGGGCGATTGTGAACAATCGGTAGTTTGTTTCATATG
CAAAGAGGAAGGACACATTTCCAGATATTGCCCCATTAAATATGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025807XLOC_025807Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041912-proteinTCONS_00041912-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041912-exon-sc0003089-1575043694:9986..10747TCONS_00041912-exon-sc0003089-1575043694:9986..10747Clytia hemisphaericaexon
TCONS_00041912-exon-sc0003089-1575043694:9771..9864TCONS_00041912-exon-sc0003089-1575043694:9771..9864Clytia hemisphaericaexon
TCONS_00041912-exon-sc0003089-1510915933:9986..10747TCONS_00041912-exon-sc0003089-1510915933:9986..10747Clytia hemisphaericaexon
TCONS_00041912-exon-sc0003089-1510915933:9771..9864TCONS_00041912-exon-sc0003089-1510915933:9771..9864Clytia hemisphaericaexon
TCONS_00041912-exon-sc0003089-1491911889:9986..10747TCONS_00041912-exon-sc0003089-1491911889:9986..10747Clytia hemisphaericaexon
TCONS_00041912-exon-sc0003089-1491911889:9771..9864TCONS_00041912-exon-sc0003089-1491911889:9771..9864Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003089supercontigsc0003089:9771..10747 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.444607	0.315589	0.513898	0.165299	0.406184	0.712097	0.895257	0.852419	0.765818	0.663814	1.53787	0.739394	1.46772	1.13459	0.851846	1.10641	2.81572	4.65983	2.5613	2.84698	9.58278	7.96409	2.46102	4.12321	1.08972	1.54328	15.5057	10.3007	5.25612	6.32816
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041912 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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