TCONS_00041911 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041911
Unique NameTCONS_00041911
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length737

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041911 ID=TCONS_00041911|Name=TCONS_00041911|organism=Clytia hemisphaerica|type=transcript|length=737bp
CtgaatctattttagtgaacttTAGCAAATACTATGGCTCATTCGATACA
AATTCTTTGATCGTCAATTGTATtccttattttcttttcttttctttcca
gGGATATAAATAAGAAAGAAATCTATTCATGAAGTAGCAATACAACTTGA
CATTATTGCAATGTGGAAAATTGCAACACTTGATAATGTCGACTTTTCTC
ATTGGAAATATTGCAAATTGAAAACCATCAATACTGtgtcaaatttcagc
caaaaccgACCATTTTCGACGTCTCCAGACTGCCCCAAAGTGTTAGCCTC
ATTTTGGCGAAGGATTCGTCCCCATGCTccaaacatcaaaatatttgaaa
aatgaaaaaaacatcccAATATATTCTGCCTCGTTTTTGCGAAGGACTCG
TCCCCAGGCTCCAAacatcaaaacttttgaaaaaaataaagaaataccCC
AAGATATGCACTCAAGAAACAagtgtgtaaaatttcagccaaatcggact
aTCTTTGAGtatttgggacatacacacagacgGGACACAGAAACTCTCAG
AtactagctcaactgaagttaagaataattttttGCGTAATTGATGAAAT
CGAAAACGATCAAGATTGGTAATTTTCTGATCGAATGGTGTATAATATGT
ATGGTTTGCTACCAGAAATCTTTTTAGTCCAGCAAGGATGTGTctaaacg
aaaaaaaatctacCATTATGGAAAATTTACAATGTCT
Run BLAST on NCBI

transcript from alignment at sc0003088:6567..7303

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041911 ID=TCONS_00041911|Name=TCONS_00041911|organism=Clytia hemisphaerica|type=transcript|length=737bp|location=Sequence derived from alignment at sc0003088:6567..7303 (Clytia hemisphaerica)
AGACATTGTAAATTTTCCATAATGgtagattttttttcgtttagACACAT
CCTTGCTGGACTAAAAAGATTTCTGGTAGCAAACCATACATATTATACAC
CATTCGATCAGAAAATTACCAATCTTGATCGTTTTCGATTTCATCAATTA
CGCaaaaaattattcttaacttcagttgagctagtaTCTGAGAGTTTCTG
TGTCCcgtctgtgtgtatgtcccaaataCTCAAAGAtagtccgatttggc
tgaaattttacacactTGTTTCTTGAGTGCATATCTTGGggtatttcttt
atttttttcaaaagttttgatgtTTGGAGCCTGGGGACGAGTCCTTCGCA
AAAACGAGGCAGAATATATTgggatgtttttttcatttttcaaatatttt
gatgtttggAGCATGGGGACGAATCCTTCGCCAAAATGAGGCTAACACTT
TGGGGCAGTCTGGAGACGTCGAAAATGGTcggttttggctgaaatttgac
aCAGTATTGATGGTTTTCAATTTGCAATATTTCCAATGAGAAAAGTCGAC
ATTATCAAGTGTTGCAATTTTCCACATTGCAATAATGTCAAGTTGTATTG
CTACTTCATGAATAGATTTCTTTCTTATTTATATCCctggaaagaaaaga
aaagaaaataaggaATACAATTGACGATCAAAGAATTTGTATCGAATGAG
CCATAGTATTTGCTAaagttcactaaaatagattcaG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025806XLOC_025806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041911-exon-sc0003088-1491911889:6567..7303TCONS_00041911-exon-sc0003088-1491911889:6567..7303Clytia hemisphaericaexon
TCONS_00041911-exon-sc0003088-1510915933:6567..7303TCONS_00041911-exon-sc0003088-1510915933:6567..7303Clytia hemisphaericaexon
TCONS_00041911-exon-sc0003088-1575043694:6567..7303TCONS_00041911-exon-sc0003088-1575043694:6567..7303Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003088supercontigsc0003088:6567..7303 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	6.84023	6.97255	2.75892	3.93967	1.71475	2.13406	1.3239	1.422	0.666204	0.859988	0	0	0	0	0	0	0	0	0	0.0700422	0	0.832793	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041911 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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