TCONS_00041908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041908
Unique NameTCONS_00041908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length366

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041908 ID=TCONS_00041908|Name=TCONS_00041908|organism=Clytia hemisphaerica|type=transcript|length=366bp
AGATCAGTGTGGTTCATACAGTGAAGTCCGGTGATAATCAATCGAGTTTG
GATGGAACTTTCTTTATATATAGTAAAGAACGCATTATATATAATATCCA
AAGCCAAAGCCTTAACATATTTATAAATTATTCACTTTTTAGTTGAGAGT
TGAGAGGACTACCCAACTTATTGTAAAAATACAGAACTcgatataatcaa
aaattgtTCCAATTATTGTCTTTTCCCTTATCCTGACATAGACTGCAGGC
GAGGTAAATATTTCGAGTGCTTCAACACATGTATGATTATAATCAAAGTA
GTTATTTCGCCGAAGCATCCAAGACCCAAAGAATCTCAAATCCATATAAT
CATCCATATCAACTGT
Run BLAST on NCBI

transcript from alignment at sc0003084:2178..2543

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041908 ID=TCONS_00041908|Name=TCONS_00041908|organism=Clytia hemisphaerica|type=transcript|length=366bp|location=Sequence derived from alignment at sc0003084:2178..2543 (Clytia hemisphaerica)
ACAGTTGATATGGATGATTATATGGATTTGAGATTCTTTGGGTCTTGGAT
GCTTCGGCGAAATAACTACTTTGATTATAATCATACATGTGTTGAAGCAC
TCGAAATATTTACCTCGCCTGCAGTCTATGTCAGGATAAGGGAAAAGACA
ATAATTGGAacaatttttgattatatcgAGTTCTGTATTTTTACAATAAG
TTGGGTAGTCCTCTCAACTCTCAACTAAAAAGTGAATAATTTATAAATAT
GTTAAGGCTTTGGCTTTGGATATTATATATAATGCGTTCTTTACTATATA
TAAAGAAAGTTCCATCCAAACTCGATTGATTATCACCGGACTTCACTGTA
TGAACCACACTGATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025803XLOC_025803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041908-exon-sc0003084-1491911889:2178..2543TCONS_00041908-exon-sc0003084-1491911889:2178..2543Clytia hemisphaericaexon
TCONS_00041908-exon-sc0003084-1510915933:2178..2543TCONS_00041908-exon-sc0003084-1510915933:2178..2543Clytia hemisphaericaexon
TCONS_00041908-exon-sc0003084-1575043694:2178..2543TCONS_00041908-exon-sc0003084-1575043694:2178..2543Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003084supercontigsc0003084:2178..2543 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.544374	1.38939	0.255858	0	0.732513	0.240807	0	0.271985	0.941213	0.723941	1.38205	0.450368	1.75308	1.92978	1.87994	1.47551	1.91057	0.630102	2.10799	1.62116	7.18451	4.40379	3.00445	3.17987	0	0.044837	5.42582	4.49797	6.89018	5.43473
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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