TCONS_00041907 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041907
Unique NameTCONS_00041907
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length330

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041907 ID=TCONS_00041907|Name=TCONS_00041907|organism=Clytia hemisphaerica|type=transcript|length=330bp
ATTTTGACAAACTTTTCATATACCTTACTTTAACGCATAATCACCATGTA
AAGCAATTACTCCAGaccagaattttttttcaaaaggtacAGTAAGTGAT
actactttcattttcagtataGCCCTGTCTTAGTGACCAACACTAAAATG
GACACTTTATTTCGAAGGTGGGGATAACATATTCTCAAcatcagttgagc
tagaatctgagaatgtctgtcggTGTGTTTGTGTTTCCCAAATAATTTGG
GCAGCCTGGAAGACTTAAAAAGTGGTCCGATTTAGTACACTTGTTCCCAC
Agatttaaagcccgaagggctagatgtcgt
Run BLAST on NCBI

transcript from alignment at sc0003082:12071..12400

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041907 ID=TCONS_00041907|Name=TCONS_00041907|organism=Clytia hemisphaerica|type=transcript|length=330bp|location=Sequence derived from alignment at sc0003082:12071..12400 (Clytia hemisphaerica)
acgacatctagcccttcgggctttaaatcTGTGGGAACAAGTGTACTAAA
TCGGACCACTTTTTAAGTCTTCCAGGCTGCCCAAATTATTTGGGAAACAC
AAACACAccgacagacattctcagattctagctcaactgatgTTGAGAAT
ATGTTATCCCCACCTTCGAAATAAAGTGTCCATTTTAGTGTTGGTCACTA
AGACAGGGCtatactgaaaatgaaagtagtATCACTTACTgtaccttttg
aaaaaaaattctggtCTGGAGTAATTGCTTTACATGGTGATTATGCGTTA
AAGTAAGGTATATGAAAAGTTTGTCAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025802XLOC_025802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041907-exon-sc0003082-1491911889:12071..12400TCONS_00041907-exon-sc0003082-1491911889:12071..12400Clytia hemisphaericaexon
TCONS_00041907-exon-sc0003082-1510915933:12071..12400TCONS_00041907-exon-sc0003082-1510915933:12071..12400Clytia hemisphaericaexon
TCONS_00041907-exon-sc0003082-1575043694:12071..12400TCONS_00041907-exon-sc0003082-1575043694:12071..12400Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003082supercontigsc0003082:12071..12400 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.879586	0.571823	0	0.974345	0	0	0	0.352895	0	1.53018	0	0.781066	1.16997	0.405009	0.998916	1.07199	2.20101	1.80477	0	1.30457	0.566956	1.24444	1.00852	0.305629	0	0	0.804058	0.429056	0.650848	0.331556
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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