TCONS_00041901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041901
Unique NameTCONS_00041901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length266

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041901 ID=TCONS_00041901|Name=TCONS_00041901|organism=Clytia hemisphaerica|type=transcript|length=266bp
CGNCGGCTTTATCTATCGAAATGATTTCATTATTTGTCTTCTTCAATCTG
ATAGTTACTTCCATGTTTAGTATTTCACACAGGATGTCATTGACGTCATT
TGTGTTGGGAGAGCTGCAAAGTTTTTGAATTAGCTTACGGTCACACGATA
ATGGTATTTGTGTTGAAGAATTCTTGAAGGTGAACTTTATGGTGGatgat
tttaaaaaatctgaTTCTACCAATGCTTCATCACAAGTTTTACAAAATGG
TATCGATCTCATATAG
Run BLAST on NCBI

transcript from alignment at sc0003077:10099..10364

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041901 ID=TCONS_00041901|Name=TCONS_00041901|organism=Clytia hemisphaerica|type=transcript|length=266bp|location=Sequence derived from alignment at sc0003077:10099..10364 (Clytia hemisphaerica)
CTATATGAGATCGATACCATTTTGTAAAACTTGTGATGAAGCATTGGTAG
AAtcagattttttaaaatcatCCACCATAAAGTTCACCTTCAAGAATTCT
TCAACACAAATACCATTATCGTGTGACCGTAAGCTAATTCAAAAACTTTG
CAGCTCTCCCAACACAAATGACGTCAATGACATCCTGTGTGAAATACTAA
ACATGGAAGTAACTATCAGATTGAAGAAGACAAATAATGAAATCATTTCG
ATAGATAAAGCCGNCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025796XLOC_025796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041901-exon-sc0003077-1491911889:10099..10364TCONS_00041901-exon-sc0003077-1491911889:10099..10364Clytia hemisphaericaexon
TCONS_00041901-exon-sc0003077-1510915933:10099..10364TCONS_00041901-exon-sc0003077-1510915933:10099..10364Clytia hemisphaericaexon
TCONS_00041901-exon-sc0003077-1575043694:10099..10364TCONS_00041901-exon-sc0003077-1575043694:10099..10364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003077supercontigsc0003077:10099..10364 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.600364	0	0.679763	0	27.5272	25.7392	21.4128	23.9858	5.80062	4.65353	3.33835	0.931034	2.64525	2.85904	6.21305	8.24712	6.07962	9.94839	3.86128	15.778	10.4161	10.3358	5.68716	3.04221	0	0	5.83338	4.70017	1.5936	3.54702
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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