TCONS_00041895 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041895
Unique NameTCONS_00041895
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041895 ID=TCONS_00041895|Name=TCONS_00041895|organism=Clytia hemisphaerica|type=transcript|length=1259bp
CGATTACTGTTTCAGATTTCCTTTAATGGAGTGGTTGATCGAATGGTGAA
AAACGATATCGACGTCAAATGTCCACAACACGAGAAAGAATGTCAATGGC
AAGGAAAAATCATTGACTATAAGGATCACGAGACAAAATGCGATTTTGTA
ATGGTACCGTGTAAAAATAAAGGATGCAACAAAAGTGTGGCTAGAATCAA
CATGGCTGATCACAAATCCATTTGTCATTATCAAATTGTTGAATGTGAAT
ATTGTAGAAAAAAGACTACAAAACTCGAGTTTGGGAATCATTTGTGTGGA
GAATGTCCGTTAGTGAACGTCAAATGTCCAAATGAGGGATGCCAATCAGC
ACTTGTTCGACAAGAGATTCCCGAACATTTGGCTGAAGAATGTTTGTACG
AAAAGATTGAATGTGAATATTTTGATGTTGGCTGCAACCAAAAAGTTCAA
CGCAAAGACCTGGATAAGCATAACAAAATCAACCTAGCCAAACACCAGAA
ATTTATGCTTCATGATTACAAATTGATGAAAATGCAACTTGCTGAGGTCT
GCCAATCTAACAAGCAGTTGAAAGATGACCTCAAAAAAGCCAACGAAAAT
ATAGAAAGGCTGAACCCACGAAACCAGAACCAATTAAAACCATTATTGTG
cggaaaaaagtatcgagtttgaacatgattttgagtagaaggttgttgcg
tgtgtttaacaaaatgtaagaaaatatataccaacacaataattgttttt
acaacagtcattatgattaaaaagaatgaactttctttacaattttcatg
acgttgaagtttttttaataatttagtgaaacacacattaagaactttct
ttctacagggtgtccctaattaaagtatcgagtttgaacatgcgattgag
tagaagagtttgtgtgtgttatcgctaaaatataagaacgttctccatca
cacaggcttattacaaaaggtagttacaacgtataaattaatcgtaatga
ctaagaaaaaagagggagagcttaaaatacaattttgtgaacacgcacat
aaaactttctactcaatcgcatgttcaaactcgatactttaattaggaaC
ACCCTGTATAGgagtggtacgactcgataatttttttccggacaccctgt
attatcaaataatggagcgtatcgaattagagagcatcaactgtaaatta
tgaaaacaaaGACGACATTTGTAATTTCTAGAATCGaaccttttaatttt
ttaaagaga
Run BLAST on NCBI

protein sequence of TCONS_00041895-protein

>TCONS_00041895-protein ID=TCONS_00041895-protein|Name=TCONS_00041895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
RLLFQISFNGVVDRMVKNDIDVKCPQHEKECQWQGKIIDYKDHETKCDFV
MVPCKNKGCNKSVARINMADHKSICHYQIVECEYCRKKTTKLEFGNHLCG
ECPLVNVKCPNEGCQSALVRQEIPEHLAEECLYEKIECEYFDVGCNQKVQ
RKDLDKHNKINLAKHQKFMLHDYKLMKMQLAEVCQSNKQLKDDLKKANEN
IERLNPRNQNQLKPLLCGKKYRV
Run BLAST on NCBI

transcript from alignment at sc0003074:4576..7428+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041895 ID=TCONS_00041895|Name=TCONS_00041895|organism=Clytia hemisphaerica|type=transcript|length=2853bp|location=Sequence derived from alignment at sc0003074:4576..7428+ (Clytia hemisphaerica)
CGATTACTGTTTCAGATTTCCTTTAATGGAGTGGTTGATCGAATGGTGAA
AAACGATATCGACGTCAAATGTCCACAACACGAGAAAGAATGTCAATGGC
AAGGAAAAATCATTGACTATAAGGTAATAACTAATTCTACCAGCAAAACC
CCATTAGTAATTCAGAATACTctagaaaaactttttctttgatcTTGGGG
ATTGANCCAGCAAAACCCCATTAGTAATTCAGAATACTctagaaaaactt
tttctttgatcTTGGGGATTGAGTAGTATCTCTTGTTTAGACggtaattt
tttgctcagaTTTTCATGCTCTATCCGATGGTATCAATCATTTTTGTCGA
ATTCCGGAAAACTTGCAATGTGGGTAAACGAAATCTTCGGCCTTCTCGAT
AAATTTCAGATATCTGAATCTGATGTTATTTCGACAAATATTAAACATAT
CATAGGGTTATAACATAGTGTATATGTGATACTATTCCAAAATACATCAG
AATTGTTGCTCGATTTTCTGTTTCACTGTTTTCACATGTACTTCAGTGTT
TTCCTTTGTTTTTTTATGAATGGACCAACGAAATTCCCCTCCGGGGCTCC
TAAGTAAGAAATAGCCCCGTACTATGAGGGTGAAGTTAACTACAATACAA
ATATCAAGGTTCGTTATGTCATTGAATACTTGCACTGAATATTTCCTTTT
TTAAGGATCACGAGACAAAATGCGATTTTGTAATGGTACCGTGTAAAAAT
AAAGGATGCAACAAAAGTGTGGCTAGAATCAACATGGCTGATCACAAATC
CATTTGTCATTATCAAATTGTTGAATGTGAATATTGTAGAAAAAAGACTA
CAAAACTCGAGTTTGGGGTAAGTTTAACTGTGACCAGTTCTTAACACTTT
CCGAGCGCATAAAAGTTTTTATTTTCGCTACACTTTTCCCTAATAAAAAC
ATAAGCGGGGTAATCAGGTTGCTTCAAATGAGGAGTTAAATTTTGGAAAA
ACTTGCCGTGTATCGGTCTTTGGTTAGCGAGGATCTGTGTCTCAGTTTCC
CCCAGTATTTTGGGACAAGGACAAACCCAGCATTCTCTTTAAAAACAACC
GTACGTTCGGCTCAAAATTAGGCGTTTTGAAATCGGACCCTTACATTGTA
GAGAAAGTTCCTGAATTCGAAATTCCTTTCTTGATGCATAGAAAATATAG
CATGTAACAGTCAAATACACGATAATCCTATAAAATAATCTAACGGCATA
GCATTTTCTGTATTTTTCTTTTAGAATCATTTGTGTGGAGAATGTCCGTT
AGTGAACGTCAAATGTCCAAATGAGGGATGCCAATCAGCACTTGTTCGAC
AAGAGGTAGAAATTAACTTCCCCTTTTCTTGCTACCGCAATTTCTTACTT
GGCAGAAACTTTCGCGAAAAAGGGCAAAAATCGCGACAGTTTCTGCCCGC
GAAAGTTTCTGTCCTTAACGTATAAGGTAAAATAATGATAATAAGAACAT
TGTTCCCTTGTTTAATTTTTCTTTCTGTTCTTTGATACTGTACAGATTCC
CGAACATTTGGCTGAAGAATGTTTGTACGAAAAGATTGAATGTGAATATT
TTGATGTTGGCTGCAACCAAAAAGTAAGTATGTTGTCGGTGGGAAGACAA
GTGTGACAAATTCTTAAAGCTAAGATTCTTAGACTTCGGATTGGCCTAAA
TTACTCACTGTGTTTCTTTCAAGAATTTTGTTAAGGAAAGACTTGGAAAG
ATCTCGTCCCCATGGTATCTAAGCCCTATCTAAGTTACCATGGACGCAAG
GTGATACAGAATAGTGTTGGTATTATCTGACGCGCGACCAGTAAGCATGA
AAAATTCTATAATACGCAGAGGGAACGAGGTTGAGGAAATCCTAtagtct
gaattgcagacctACACAAAACAGGAGCACAAATCTGTTAGTGGATGCCA
TAGTAGCCTAAGGAAAACCTTGGTTTTGAACGAGACATGCAACTCTTTCT
AATTAACCATTTTTGCGTTTTATTCTTGAATTTATCAGGTTCAACGCAAA
GACCTGGATAAGCATAACAAAATCAACCTAGCCAAACACCAGAAATTTAT
GCTTCATGATTACAAATTGATGAAAATGCAACTTGCTGAGGTCTGCCAAT
CTAACAAGCAGTTGAAAGATGACCTCAAAAAAGCCAACGAAAATATAGAA
AGGCTGAACCCACGAAACCAGAACCAATTAAAACCATTATTGTGcggaaa
aaagtatcgagtttgaacatgattttgagtagaaggttgttgcgtgtgtt
taacaaaatgtaagaaaatatataccaacacaataattgtttttacaaca
gtcattatgattaaaaagaatgaactttctttacaattttcatgacgttg
aagtttttttaataatttagtgaaacacacattaagaactttctttctac
agggtgtccctaattaaagtatcgagtttgaacatgcgattgagtagaag
agtttgtgtgtgttatcgctaaaatataagaacgttctccatcacacagg
cttattacaaaaggtagttacaacgtataaattaatcgtaatgactaaga
aaaaagagggagagcttaaaatacaattttgtgaacacgcacataaaact
ttctactcaatcgcatgttcaaactcgatactttaattaggaaCACCCTG
TATAGgagtggtacgactcgataatttttttccggacaccctgtattatc
aaataatggagcgtatcgaattagagagcatcaactgtaaattatgaaaa
caaaGACGACATTTGTAATTTCTAGAATCGaaccttttaattttttaaag
aga

Coding sequence (CDS) from alignment at sc0003074:4576..7428+

>TCONS_00041895 ID=TCONS_00041895|Name=TCONS_00041895|organism=Clytia hemisphaerica|type=CDS|length=3360bp|location=Sequence derived from alignment at sc0003074:4576..7428+ (Clytia hemisphaerica)
CGATTACTGTTTCAGATTTCCTTTAATGGAGTGGTTGATCGAATGGTGAA
AAACGATATCGACGTCAAATGTCCACAACACGAGAAAGAATGTCAATGGC
AAGGAAAAATCATTGACTATAAGGATCACGAGACAAAATGCGATTTTGTA
ATGGTACCGTGTAAAAATAAAGGATGCAACAAAAGTGTGGCTAGAATCAA
CATGGCTGATCACAAATCCATTTGTCATTATCAAATTGTTGAATGTGAAT
ATTGTAGAAAAAAGACTACAAAACTCGAGTTTGGGAATCATTTGTGTGGA
GAATGTCCGTTAGTGAACGTCAAATGTCCAAATGAGGGATGCCAATCAGC
ACTTGTTCGACAAGAGATTCCCGAACATTTGGCTGAAGAATGTTTGTACG
AAAAGATTGAATGTGAATATTTTGATGTTGGCTGCAACCAAAAAGTTCAA
CGCAAAGACCTGGATAAGCATAACAAAATCAACCTAGCCAAACACCAGAA
ATTTATGCTTCATGATTACAAATTGATGAAAATGCAACTTGCTGAGGTCT
GCCAATCTAACAAGCAGTTGAAAGATGACCTCAAAAAAGCCAACGAAAAT
ATAGAAAGGCTGAACCCACGAAACCAGAACCAATTAAAACCATTATTGTG
cggaaaaaagtatcgagtttgaCGATTACTGTTTCAGATTTCCTTTAATG
GAGTGGTTGATCGAATGGTGAAAAACGATATCGACGTCAAATGTCCACAA
CACGAGAAAGAATGTCAATGGCAAGGAAAAATCATTGACTATAAGGATCA
CGAGACAAAATGCGATTTTGTAATGGTACCGTGTAAAAATAAAGGATGCA
ACAAAAGTGTGGCTAGAATCAACATGGCTGATCACAAATCCATTTGTCAT
TATCAAATTGTTGAATGTGAATATTGTAGAAAAAAGACTACAAAACTCGA
GTTTGGGAATCATTTGTGTGGAGAATGTCCGTTAGTGAACGTCAAATGTC
CAAATGAGGGATGCCAATCAGCACTTGTTCGACAAGAGATTCCCGAACAT
TTGGCTGAAGAATGTTTGTACGAAAAGATTGAATGTGAATATTTTGATGT
TGGCTGCAACCAAAAAGTTCAACGCAAAGACCTGGATAAGCATAACAAAA
TCAACCTAGCCAAACACCAGAAATTTATGCTTCATGATTACAAATTGATG
AAAATGCAACTTGCTGAGGTCTGCCAATCTAACAAGCAGTTGAAAGATGA
CCTCAAAAAAGCCAACGAAAATATAGAAAGGCTGAACCCACGAAACCAGA
ACCAATTAAAACCATTATTGTGcggaaaaaagtatcgagtttgaCGATTA
CTGTTTCAGATTTCCTTTAATGGAGTGGTTGATCGAATGGTGAAAAACGA
TATCGACGTCAAATGTCCACAACACGAGAAAGAATGTCAATGGCAAGGAA
AAATCATTGACTATAAGGATCACGAGACAAAATGCGATTTTGTAATGGTA
CCGTGTAAAAATAAAGGATGCAACAAAAGTGTGGCTAGAATCAACATGGC
TGATCACAAATCCATTTGTCATTATCAAATTGTTGAATGTGAATATTGTA
GAAAAAAGACTACAAAACTCGAGTTTGGGAATCATTTGTGTGGAGAATGT
CCGTTAGTGAACGTCAAATGTCCAAATGAGGGATGCCAATCAGCACTTGT
TCGACAAGAGATTCCCGAACATTTGGCTGAAGAATGTTTGTACGAAAAGA
TTGAATGTGAATATTTTGATGTTGGCTGCAACCAAAAAGTTCAACGCAAA
GACCTGGATAAGCATAACAAAATCAACCTAGCCAAACACCAGAAATTTAT
GCTTCATGATTACAAATTGATGAAAATGCAACTTGCTGAGGTCTGCCAAT
CTAACAAGCAGTTGAAAGATGACCTCAAAAAAGCCAACGAAAATATAGAA
AGGCTGAACCCACGAAACCAGAACCAATTAAAACCATTATTGTGcggaaa
aaagtatcgagtttgaCGATTACTGTTTCAGATTTCCTTTAATGGAGTGG
TTGATCGAATGGTGAAAAACGATATCGACGTCAAATGTCCACAACACGAG
AAAGAATGTCAATGGCAAGGAAAAATCATTGACTATAAGGATCACGAGAC
AAAATGCGATTTTGTAATGGTACCGTGTAAAAATAAAGGATGCAACAAAA
GTGTGGCTAGAATCAACATGGCTGATCACAAATCCATTTGTCATTATCAA
ATTGTTGAATGTGAATATTGTAGAAAAAAGACTACAAAACTCGAGTTTGG
GAATCATTTGTGTGGAGAATGTCCGTTAGTGAACGTCAAATGTCCAAATG
AGGGATGCCAATCAGCACTTGTTCGACAAGAGATTCCCGAACATTTGGCT
GAAGAATGTTTGTACGAAAAGATTGAATGTGAATATTTTGATGTTGGCTG
CAACCAAAAAGTTCAACGCAAAGACCTGGATAAGCATAACAAAATCAACC
TAGCCAAACACCAGAAATTTATGCTTCATGATTACAAATTGATGAAAATG
CAACTTGCTGAGGTCTGCCAATCTAACAAGCAGTTGAAAGATGACCTCAA
AAAAGCCAACGAAAATATAGAAAGGCTGAACCCACGAAACCAGAACCAAT
TAAAACCATTATTGTGcggaaaaaagtatcgagtttgaCGATTACTGTTT
CAGATTTCCTTTAATGGAGTGGTTGATCGAATGGTGAAAAACGATATCGA
CGTCAAATGTCCACAACACGAGAAAGAATGTCAATGGCAAGGAAAAATCA
TTGACTATAAGGATCACGAGACAAAATGCGATTTTGTAATGGTACCGTGT
AAAAATAAAGGATGCAACAAAAGTGTGGCTAGAATCAACATGGCTGATCA
CAAATCCATTTGTCATTATCAAATTGTTGAATGTGAATATTGTAGAAAAA
AGACTACAAAACTCGAGTTTGGGAATCATTTGTGTGGAGAATGTCCGTTA
GTGAACGTCAAATGTCCAAATGAGGGATGCCAATCAGCACTTGTTCGACA
AGAGATTCCCGAACATTTGGCTGAAGAATGTTTGTACGAAAAGATTGAAT
GTGAATATTTTGATGTTGGCTGCAACCAAAAAGTTCAACGCAAAGACCTG
GATAAGCATAACAAAATCAACCTAGCCAAACACCAGAAATTTATGCTTCA
TGATTACAAATTGATGAAAATGCAACTTGCTGAGGTCTGCCAATCTAACA
AGCAGTTGAAAGATGACCTCAAAAAAGCCAACGAAAATATAGAAAGGCTG
AACCCACGAAACCAGAACCAATTAAAACCATTATTGTGcggaaaaaagta
tcgagtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025790XLOC_025790Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041895-exon-sc0003074-1491911889:4576..4698TCONS_00041895-exon-sc0003074-1491911889:4576..4698Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1510915933:4576..4698TCONS_00041895-exon-sc0003074-1510915933:4576..4698Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1575043694:4576..4698TCONS_00041895-exon-sc0003074-1575043694:4576..4698Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1491911889:5281..5442TCONS_00041895-exon-sc0003074-1491911889:5281..5442Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1510915933:5281..5442TCONS_00041895-exon-sc0003074-1510915933:5281..5442Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1575043694:5281..5442TCONS_00041895-exon-sc0003074-1575043694:5281..5442Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1491911889:5850..5930TCONS_00041895-exon-sc0003074-1491911889:5850..5930Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1510915933:5850..5930TCONS_00041895-exon-sc0003074-1510915933:5850..5930Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1575043694:5850..5930TCONS_00041895-exon-sc0003074-1575043694:5850..5930Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1491911889:6121..6198TCONS_00041895-exon-sc0003074-1491911889:6121..6198Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1510915933:6121..6198TCONS_00041895-exon-sc0003074-1510915933:6121..6198Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1575043694:6121..6198TCONS_00041895-exon-sc0003074-1575043694:6121..6198Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1491911889:6614..7428TCONS_00041895-exon-sc0003074-1491911889:6614..7428Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1510915933:6614..7428TCONS_00041895-exon-sc0003074-1510915933:6614..7428Clytia hemisphaericaexon
TCONS_00041895-exon-sc0003074-1575043694:6614..7428TCONS_00041895-exon-sc0003074-1575043694:6614..7428Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041895-proteinTCONS_00041895-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003074supercontigsc0003074:4576..7428 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.144081	0.154818	0	0.168699	0.224653	0	0.206249	0.19861	0.551858	0.586453	0.792499	0.844972	9.60824	9.14604	8.82162	6.64153	1.95554	2.49537	4.58396	3.84906	2.9222	2.61659	2.72553	3.30577	4.7499	4.07427	7.09493	9.80559	5.2189	6.05857
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041895 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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