|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041890 ID=TCONS_00041890|Name=TCONS_00041890|organism=Clytia hemisphaerica|type=transcript|length=314bp
CCATTATTATCATGGCTAAAGATGTGTGTGGGCGTTTGTGTGTGTTATGG
GCGATTTATTTTCTTCCCCCGCCCACCCAAGctttgGAAATCCACACATC
ATATCCTGGAGTTTACGAAGCTGGAAAGCCAATTATTCTGCAATGGAATG
TGACTTTTTCCTCCAGGCTAGATGACATCAATGTCCTTCACTCAACTAAA
TTAAACCTTTACCTCAGCAGCAGAAATGGAACGAAAATCCATGTTGGAAC
ACAAAGAGGCGTTGACGAAAATTTCAACGCTTTAACCAAAGATGAAGTAC
AAATCTACATCGAT Run BLAST on NCBI protein sequence of TCONS_00041890-protein >TCONS_00041890-protein ID=TCONS_00041890-protein|Name=TCONS_00041890-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
IIIMAKDVCGRLCVLWAIYFLPPPTQALEIHTSYPGVYEAGKPIILQWNV
TFSSRLDDINVLHSTKLNLYLSSRNGTKIHVGTQRGVDENFNALTKDEVQ
IYID Run BLAST on NCBI transcript from alignment at sc0003069:50..2545- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041890 ID=TCONS_00041890|Name=TCONS_00041890|organism=Clytia hemisphaerica|type=transcript|length=2496bp|location=Sequence derived from alignment at sc0003069:50..2545- (Clytia hemisphaerica)
CCATTATTATCATGGCTAAAGATGTGTGTGGGCGTTTGTGTGTGTTATGG
GCGATTTATTTTCTTCCCCCGCCCACCCAAGGTATGTCGTTTTGTTCGTG
ATTGTGTCAACCTTTATCGTTCATTTGACTTTTGAAATATCAGCTTATTT
TTCTAGCCCGCCTTTTCCCTTGCACTTTTGCTTATGGCTTCATATTTTTG
GTCAAAAAAAATTCTCCGGTCGACCTAATTGACTTAGTTTTTAAAGATCA
TACACTCATTTTGTTTTATAAGCATAAGGGAAAATCGGGTCGAGGCCCTG
TATGCTTAGTAACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNGCTGCTGTTGTCTCGCACCACACGGCTGCCATTGCGCCCTCTTAAAGG
GATCGAGGCTAATTTCAAAGATACCTCTATTGAACTATTTAGAATAAATG
TTTAGCTGAATAGTGGTACTAACAACATTGTTTCCAGATTTTGATTCAGA
TTTTTTATTTCAATTGTTATGTTTTGTTTCTTCCCATATCGTTGAGACAT
TCCGCTGTAGGCTTAGAACAGCTGTAGAACAGAACAATACTCTCGACTCT
TTTGTATTAGTCTCATTGACATCCTCTCGTCCTCTTTGTAAAAGCGTCGT
TTTAAAGCTTATACTTGCAAAATAGTCCTTTCAAGCCTAGACTTCATCAG
TTCTGATTTTGAGAACCTTACCGTAGGATCACATAAGATTCCGATTCCTG
CTATAAACATTCCACTTGCCACTTGAAAACAGATGATAGTTAGTTCCGAC
TAGTTGAAAACAATGAAACAAGTTGGCCGCTTATAATAATAATCAAAACA
TTACTTCTTTTTTGCGTTTTATGATTTGCCAGCTTGGATTAATTCACTTT
TTTCTGCCGGTATGCCCGGGAAAACTAGCGGAATGATCCCNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGTGCCCCCCCCCCC
CGGGCTTAGCAAAACCTTATTTTCAGCTTTAATTTATGCTTATTTATTTA
TGAACATTGATTCGGTGTAATAATGATGTAATTTGGCACCACAGGTGAAA
ATCTTCGACAGTTTTTGGTCTAACAAAGCTCAAACAACTTTAAAAGTGAC
ACTAAAAAGGTCAGAAAAGAAGGTTTAGAAAAGCTGCACGAATTTTTTCG
CATTTCAGCTTGGAGGTATGCTTAGCATTATGTTTATTTTTTACCGAATT
TGAGCCTAAGAACGTTATGCTTATAATAACAATGAGTGTATTGATTTTAA
ATGGCAAACATGCTTTATGAACATTAAGCTACGTAGATTGGTCTTTTTTT
TTACTTTAATTGCATTTACACCAGGCCAAAACTGGCGAAAATCGCGGACG
CTTTTGCTCACGAAAATTTGATACGCCTAGAGTATGTTTATTTTAAATAT
CTTAAAATTTTAGCTTTGGAAATCCACACATCATATCCTGGAGTTTACGA
AGCTGGAAAGCCAATTATTCTGCAATGGAATGTGACTTTTTCCTCCAGGC
TAGATGACATCAATGTCCTTCACTCAACTAAATTAAACCTTTACCTCAGC
AGCAGAAATGGAACGAAAATCCATGTTGGAACACAAAGAGGCGTTGACGA
AAATTTCAACGCTTTAACCAAAGATGAAGTACAAATCTACATCGAT Coding sequence (CDS) from alignment at sc0003069:50..2545- >TCONS_00041890 ID=TCONS_00041890|Name=TCONS_00041890|organism=Clytia hemisphaerica|type=CDS|length=624bp|location=Sequence derived from alignment at sc0003069:50..2545- (Clytia hemisphaerica)
CTTTGGAAATCCACACATCATATCCTGGAGTTTACGAAGCTGGAAAGCCA
ATTATTCTGCAATGGAATGTGACTTTTTCCTCCAGGCTAGATGACATCAA
TGTCCTTCACTCAACTAAATTAAACCTTTACCTCAGCAGCAGAAATGGAA
CGAAAATCCATGTTGGAACACAAAGAGGCGTTGACGAAAATTTCAACGCT
TTAACCAAAGATGAAGTACAAATCTACATCGATATTATTATCATGGCTAA
AGATGTGTGTGGGCGTTTGTGTGTGTTATGGGCGATTTATTTTCTTCCCC
CGCCCACCCAAGCTTTGGAAATCCACACATCATATCCTGGAGTTTACGAA
GCTGGAAAGCCAATTATTCTGCAATGGAATGTGACTTTTTCCTCCAGGCT
AGATGACATCAATGTCCTTCACTCAACTAAATTAAACCTTTACCTCAGCA
GCAGAAATGGAACGAAAATCCATGTTGGAACACAAAGAGGCGTTGACGAA
AATTTCAACGCTTTAACCAAAGATGAAGTACAAATCTACATCGATATTAT
TATCATGGCTAAAGATGTGTGTGGGCGTTTGTGTGTGTTATGGGCGATTT
ATTTTCTTCCCCCGCCCACCCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041890-exon-sc0003069-1575043694:2465..2545 | TCONS_00041890-exon-sc0003069-1575043694:2465..2545 | Clytia hemisphaerica | exon |
| TCONS_00041890-exon-sc0003069-1575043694:50..282 | TCONS_00041890-exon-sc0003069-1575043694:50..282 | Clytia hemisphaerica | exon |
| TCONS_00041890-exon-sc0003069-1510915933:2465..2545 | TCONS_00041890-exon-sc0003069-1510915933:2465..2545 | Clytia hemisphaerica | exon |
| TCONS_00041890-exon-sc0003069-1510915933:50..282 | TCONS_00041890-exon-sc0003069-1510915933:50..282 | Clytia hemisphaerica | exon |
| TCONS_00041890-exon-sc0003069-1491911889:2465..2545 | TCONS_00041890-exon-sc0003069-1491911889:2465..2545 | Clytia hemisphaerica | exon |
| TCONS_00041890-exon-sc0003069-1491911889:50..282 | TCONS_00041890-exon-sc0003069-1491911889:50..282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003069 | supercontig | sc0003069:50..2545 - |
Blast
The following BLAST results are available for this feature:
|
