TCONS_00041887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041887
Unique NameTCONS_00041887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1326

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041887 ID=TCONS_00041887|Name=TCONS_00041887|organism=Clytia hemisphaerica|type=transcript|length=1326bp
NGGCATGAATAACCTCCACATTTTCGTTTGAATCTTGCATAGATGGCTAC
ACAAGCGAGATATGGGCTGGCATCAGCAGTGTCAATGGTTGAGATGTCAA
GGCTTTCGGCATCATCTGGGATGATAGCTCTTTTGAAGTGCAGATGTTTG
ATCTCTTGCATCATCTCAAAGTGATTGGTCCACAAAGCTTTTAGATCATT
GGGGATGGGGTCGTCCCAGTTTAATCCTCGTATGACAAGGTCATGAAGAT
CTATTTTCATGGCAGCTGTGAGTGGAGTGACTTTTCCGAGGATGTCGTAA
ACTTCTCCCACTTTGGAGGTGCAGTGACGACGAGTGAGTACACTTGGGAT
GATGTTGTTTGCCTGATCAGGTTTCTTCCCTCGACGTTTCTTAGCAAAGT
TGAGGTTACCAAGATTGAGTGATAAGACATCTTCATCTGGCAGCCATTTG
AATCCAGCAACGATGACCGATTCGTTGTCATCACTGAGTGCTTTATCTGG
TCTCTTACCAGAAAGTGTGATTCCTTTGAGCTGAAATCCTCCTTGGTTGA
CTACATGTTCAAGCTCCTTGGATCTTTGGACTGCTTTCTCCATGGACTCC
TCACCTGTAACGCAGTCATCAACATAAACATCTTGATGAAGAATCCGAGA
CACTTCTGGATATTCGTCTGAGTGCAACCTTGCTACTTCACGAAGAGCGA
ACTCTGCTTGATTACCGGAGGGTTTGACGCCGTAGATTAACGTTTGAATG
ACCTTCTGTTCAGGTATTTTTGTCGGATCTAGGTCCTGTTGCCATACATA
TCTTTGGAAGCACCAGTCCTTTGAATCTAGCTTGATGGTATTGTACATTT
TACGTACATCTGAGTGGATAGCGACTTTGTGGATGGACCAACGAATGAGT
ATCTCCTGAAGATGGTTCAAACCGTTTCGTCCCTTTGCAAGGCAATCATT
TAGACTATGACCGGAAGGTGTGTTCTGAGAAGCGTCAAATACTATTCTGC
AAGGTGTGCTTAACGAACTGGGTTTCCACACAGCTCGCCATGGAATGTAG
TTTTGAATCGGTTGAAAATGTAGCATCTCTTGGATATCTGGTGGAAGATT
TGAAACGTAATCCACAAATCCCATTGTATGGAGCTTTGCTTCAGATTGGA
TGATGTCCTGTTTGTCATTAGCATTTTCTGGCTTGTTCAGCTTTCGAAGC
TGTTGCTGGTATACTTTCAGTGCAATCGACTTGTTAGGTAACAACTTTTC
GGTTGGATCACAAATGAATGGAAGCCTTGCTGTTGTGACTTTATTTGCAA
GGTCTACATGAACAGAAGAATTAATA
Run BLAST on NCBI

transcript from alignment at sc0003064:6779..8166+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041887 ID=TCONS_00041887|Name=TCONS_00041887|organism=Clytia hemisphaerica|type=transcript|length=1388bp|location=Sequence derived from alignment at sc0003064:6779..8166+ (Clytia hemisphaerica)
NGGCATGAATAACCTCCACATTTTCGTTTGAATCTTGCATAGATGGCTAC
ACAAGCGAGATATGGGCTGGCATCAGCAGTGTCAATGGTTGAGATGTCAA
GGCTTTCGGCATCATCTGGGATGATAGCTCTTTTGAAGTGCAGATGTTTG
ATCTCTTGCATCATCTCAAAGTGATTGGTCCACAAAGCTTTTAGATCATT
GGGGATGGGGTCGTCCCAGTTTAATCCTCGTATGACAAGGTCATGAAGAT
CTATTTTCATGGCAGCTGTGAGTGGAGTGACTTTTCCGAGGATGTCGTAA
ACTTCTCCCACTTTGGAGGTGCAGTGACGACGAGTGAGNTGACTTTTCCG
AGGATGTCGTAAACTTCTCCCACTTTGGAGGTGCAGTGACGACGAGTGAG
TACACTTGGGATGATGTTGTTTGCCTGATCAGGTTTCTTCCCTCGACGTT
TCTTAGCAAAGTTGAGGTTACCAAGATTGAGTGATAAGACATCTTCATCT
GGCAGCCATTTGAATCCAGCAACGATGACCGATTCGTTGTCATCACTGAG
TGCTTTATCTGGTCTCTTACCAGAAAGTGTGATTCCTTTGAGCTGAAATC
CTCCTTGGTTGACTACATGTTCAAGCTCCTTGGATCTTTGGACTGCTTTC
TCCATGGACTCCTCACCTGTAACGCAGTCATCAACATAAACATCTTGATG
AAGAATCCGAGACACTTCTGGATATTCGTCTGAGTGCAACCTTGCTACTT
CACGAAGAGCGAACTCTGCTTGATTACCGGAGGGTTTGACGCCGTAGATT
AACGTTTGAATGACCTTCTGTTCAGGTATTTTTGTCGGATCTAGGTCCTG
TTGCCATACATATCTTTGGAAGCACCAGTCCTTTGAATCTAGCTTGATGG
TATTGTACATTTTACGTACATCTGAGTGGATAGCGACTTTGTGGATGGAC
CAACGAATGAGTATCTCCTGAAGATGGTTCAAACCGTTTCGTCCCTTTGC
AAGGCAATCATTTAGACTATGACCGGAAGGTGTGTTCTGAGAAGCGTCAA
ATACTATTCTGCAAGGTGTGCTTAACGAACTGGGTTTCCACACAGCTCGC
CATGGAATGTAGTTTTGAATCGGTTGAAAATGTAGCATCTCTTGGATATC
TGGTGGAAGATTTGAAACGTAATCCACAAATCCCATTGTATGGAGCTTTG
CTTCAGATTGGATGATGTCCTGTTTGTCATTAGCATTTTCTGGCTTGTTC
AGCTTTCGAAGCTGTTGCTGGTATACTTTCAGTGCAATCGACTTGTTAGG
TAACAACTTTTCGGTTGGATCACAAATGAATGGAAGCCTTGCTGTTGTGA
CTTTATTTGCAAGGTCTACATGAACAGAAGAATTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025782XLOC_025782Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041887-exon-sc0003064-1491911889:6779..7096TCONS_00041887-exon-sc0003064-1491911889:6779..7096Clytia hemisphaericaexon
TCONS_00041887-exon-sc0003064-1510915933:6779..7096TCONS_00041887-exon-sc0003064-1510915933:6779..7096Clytia hemisphaericaexon
TCONS_00041887-exon-sc0003064-1575043694:6779..7096TCONS_00041887-exon-sc0003064-1575043694:6779..7096Clytia hemisphaericaexon
TCONS_00041887-exon-sc0003064-1491911889:7159..8166TCONS_00041887-exon-sc0003064-1491911889:7159..8166Clytia hemisphaericaexon
TCONS_00041887-exon-sc0003064-1510915933:7159..8166TCONS_00041887-exon-sc0003064-1510915933:7159..8166Clytia hemisphaericaexon
TCONS_00041887-exon-sc0003064-1575043694:7159..8166TCONS_00041887-exon-sc0003064-1575043694:7159..8166Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003064supercontigsc0003064:6779..8166 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.52411	2.91027	1.38098	1.05884	1.94054	1.37673	2.47482	2.60854	1.05868	2.28487	1.90473	5.1344	0.570339	1.14592	0.333448	0.51812	0.296473	0.456763	0.45443	0.847941	0.9035	0.385888	0.365668	0.515223	0.427459	0.86046	0.269871	0.331004	0.319994	0.412075
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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