TCONS_00041880 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041880
Unique NameTCONS_00041880
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041880 ID=TCONS_00041880|Name=TCONS_00041880|organism=Clytia hemisphaerica|type=transcript|length=336bp
GTTCGCGTCAGCCGACTGACCAACTTGGCAGACAAAAATTCCTAGTCAGA
CGAGTCAGAAAATTGTCGGAATTTTTCATCAAGCGAACgaacaaatatta
aaaactatactttgaaaccattttccaaaaaacctgactatatttactac
cgaccgaccgactcaattttaagaagatttttgacgcgaacagaacatat
tttCGATTGCTGCCTAACCCATGCCATGCATCAATATCAATCGCAATCAC
AATAATTAATAATCGCAACGTCTggatttttgtccataatttgttgaaaa
atactttggtctTACTTAATCAAATCCCAGTAACAC
Run BLAST on NCBI

transcript from alignment at sc0003062:11755..12090

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041880 ID=TCONS_00041880|Name=TCONS_00041880|organism=Clytia hemisphaerica|type=transcript|length=336bp|location=Sequence derived from alignment at sc0003062:11755..12090 (Clytia hemisphaerica)
GTGTTACTGGGATTTGATTAAGTAagaccaaagtatttttcaacaaatta
tggacaaaaatccAGACGTTGCGATTATTAATTATTGTGATTGCGATTGA
TATTGATGCATGGCATGGGTTAGGCAGCAATCGaaaatatgttctgttcg
cgtcaaaaatcttcttaaaattgagtcggtcggtcggtagtaaatatagt
caggttttttggaaaatggtttcaaagtatagtttttaatatttgttcGT
TCGCTTGATGAAAAATTCCGACAATTTTCTGACTCGTCTGACTAGGAATT
TTTGTCTGCCAAGTTGGTCAGTCGGCTGACGCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025777XLOC_025777Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041880-exon-sc0003062-1491911889:11755..12090TCONS_00041880-exon-sc0003062-1491911889:11755..12090Clytia hemisphaericaexon
TCONS_00041880-exon-sc0003062-1510915933:11755..12090TCONS_00041880-exon-sc0003062-1510915933:11755..12090Clytia hemisphaericaexon
TCONS_00041880-exon-sc0003062-1575043694:11755..12090TCONS_00041880-exon-sc0003062-1575043694:11755..12090Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003062supercontigsc0003062:11755..12090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00624774	0	0	0	0	0.430478	0.374589	0.726269	0.75509	0	0.420257	0	0.722232	0	1.18233	0	0.453867	0	0.455972	0	0.77223	2.76173	0	0	0	0.267675	1.68758	1.18106	2.6058	1.99275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041880 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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