TCONS_00041874 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041874
Unique NameTCONS_00041874
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length812

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041874 ID=TCONS_00041874|Name=TCONS_00041874|organism=Clytia hemisphaerica|type=transcript|length=812bp
CGTAAACACGTTTTTACCAGGCATGGATGGTACTACTTTTTCGAAACGAG
ACCTGACCCaaaagttgttttgccagaactTTCGACAAAGAGTGAAAAAC
CAAATAAATCTAGGAGTAAAACCAACAATATGCCAATGTTTTCGAAAGAC
TGTAAATTTGATAAGATGTTCAAGCTCTGGCTCTGCAGCCCTGGCGGAGG
AATGAAGAGCTTCAGCCAAGCAAGCCAGATGAGTTGCCGTGTCTTGAAAT
TCCTCAAATTTTGCTGCCAAGCTGGGATGTCCCGTTTACAGTAGTAGATT
TTTGCTTGGGAAACGTGACCGCTATATCAGATTTCATCGAATACCTTAAA
ACCCGCTGGGAAGTTGGCTACGCTGGTATTATTGGATATATGCATTCTTT
ATCTCATGTTTTAGACTACCGCATAATTGAAAGAGGAGATTCACAAACAA
CATTTTCGGAAATCTATATCGACCGGGTAAAACTTTCACTATCTAAAAAA
ATGAGATCAGGATGGAATGTTTTGTTAAGTGCCGAATACCTATCAAAAAT
TAACTGTTGGGCCACTCTCGACGAAATGCAAAAAGTCGTGCCATATCACA
CGGACAGGTTTTCACAAATTTTACTGAATGCCTCGGATGAAGCCCTTCCG
CTGCCACCACACGACTTATCTTTCTCTACTTCCTTCTTAACGGCCATATT
TTTCATCGTGATAAAAGCTACTAGGCCGATGACTTTTCAATTTCTTACAG
TCGAAATGGTGGAAAATATCAACGAAGGGGACATGATAGACCAAACTGTT
TTTAAAACACAG
Run BLAST on NCBI

transcript from alignment at sc0003057:4380..5191+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041874 ID=TCONS_00041874|Name=TCONS_00041874|organism=Clytia hemisphaerica|type=transcript|length=812bp|location=Sequence derived from alignment at sc0003057:4380..5191+ (Clytia hemisphaerica)
CGTAAACACGTTTTTACCAGGCATGGATGGTACTACTTTTTCGAAACGAG
ACCTGACCCaaaagttgttttgccagaactTTCGACAAAGAGTGAAAAAC
CAAATAAATCTAGGAGTAAAACCAACAATATGCCAATGTTTTCGAAAGAC
TGTAAATTTGATAAGATGTTCAAGCTCTGGCTCTGCAGCCCTGGCGGAGG
AATGAAGAGCTTCAGCCAAGCAAGCCAGATGAGTTGCCGTGTCTTGAAAT
TCCTCAAATTTTGCTGCCAAGCTGGGATGTCCCGTTTACAGTAGTAGATT
TTTGCTTGGGAAACGTGACCGCTATATCAGATTTCATCGAATACCTTAAA
ACCCGCTGGGAAGTTGGCTACGCTGGTATTATTGGATATATGCATTCTTT
ATCTCATGTTTTAGACTACCGCATAATTGAAAGAGGAGATTCACAAACAA
CATTTTCGGAAATCTATATCGACCGGGTAAAACTTTCACTATCTAAAAAA
ATGAGATCAGGATGGAATGTTTTGTTAAGTGCCGAATACCTATCAAAAAT
TAACTGTTGGGCCACTCTCGACGAAATGCAAAAAGTCGTGCCATATCACA
CGGACAGGTTTTCACAAATTTTACTGAATGCCTCGGATGAAGCCCTTCCG
CTGCCACCACACGACTTATCTTTCTCTACTTCCTTCTTAACGGCCATATT
TTTCATCGTGATAAAAGCTACTAGGCCGATGACTTTTCAATTTCTTACAG
TCGAAATGGTGGAAAATATCAACGAAGGGGACATGATAGACCAAACTGTT
TTTAAAACACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025771XLOC_025771Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041874-exon-sc0003057-1491911889:4380..5191TCONS_00041874-exon-sc0003057-1491911889:4380..5191Clytia hemisphaericaexon
TCONS_00041874-exon-sc0003057-1510915933:4380..5191TCONS_00041874-exon-sc0003057-1510915933:4380..5191Clytia hemisphaericaexon
TCONS_00041874-exon-sc0003057-1575043694:4380..5191TCONS_00041874-exon-sc0003057-1575043694:4380..5191Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003057supercontigsc0003057:4380..5191 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.130348	0	0	0	0	0.0646599	0.0973453	0	0	0	0.243819	0.127487	0.0609691	0	0.112972	0	0	0.472458	0.541554	0	0.0379081	0.252676	0.16913	1.59158	1.50476	0.643303	0.230485
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041874 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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