TCONS_00041869 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041869
Unique NameTCONS_00041869
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length592

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041869 ID=TCONS_00041869|Name=TCONS_00041869|organism=Clytia hemisphaerica|type=transcript|length=592bp
AGCCTCAGTACTTTATAGTTTTTGATACCATTCCTTATATTATTTGTAAG
gtaaatcaacataaaaactAATAATCACATTGGTTTTTGTGTGATAGATC
AAAGTTGATGACAGTGGTAAAATCGTTGATGcgaaattcaaaactttcgg
ATGTGGATCGGCAATTGCATCAAGCTCACTCGCCACTGAATGGGTCAAAG
GAAAACAGATCGGTGAAGCTTCTCAAATCAAAAACACGGACATTGCAAAG
GAATTATCGCTACCACCCTTCAAACTTCACTGCTCAATGTTGGCAGAAGA
CGCGATCAAAGCGGCGCTGAAAGATTAtcattccaaacaacaaaagaaag
ctGCATCAGCATAATTTCCAATACAAGCCATTCTTTCGTTTATTTATCCA
TTTACTGCAACAACCCTTTtgtattttaaaatgaaatttagtTTTTGTAT
ATACGTAACGAAGCGTGGAGGTCTTTTATGTAACATTGTAAAACTTATCT
TGTTTTCAGGTTTCATTCTTTTTGAACTGAAGATGGTATTATAAAGAAAT
GACTCTAAATGAACGATTTCTCCTTCCATTTTCTATTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0003056:6440..7479+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041869 ID=TCONS_00041869|Name=TCONS_00041869|organism=Clytia hemisphaerica|type=transcript|length=1040bp|location=Sequence derived from alignment at sc0003056:6440..7479+ (Clytia hemisphaerica)
AGCCTCAGTACTTTATAGTTTTTGATACCATTCCTTATATTATTTGTAAG
gtaaatcaacataaaaactAATAATCACATTGGTTTTTGTGTGATAGATC
AAAGTTGATGACAGTGGTAAAATCGTTGATGcgaaattcaaaactttcgg
ATGTGGATCGGCAATTGCATCAAGCTCACTCGCCACTGAATGGGTCAAAG
GAAAACAGGTATCTTTTGATTTTAATCTTTTTCTCATCTATATCACAATG
CTTTGTTTTTTACCCTATGAATTGTTGCTTAACCGAGAATACGGCCCGGG
GACCAGGTTGGGGACATAAGTTTTGATTATTGTCTACAATGTCTTTTTTT
CTAGATCGGTGAAGCTTCTCAAATCAAAAACACGGACATTGCAAAGGAAT
TATCGCTACCACCCTTCAAACTTCACTGCTCAAGTAAGAACTCTTTACCA
CCCGTCAAACTCCACTGTTTGAGTAAGAACTCTTTACCACCCGTCAAACT
TCACTGCTCAAGTAAGAACTCTTTACCACCCGTACAACTCCACTGTTCAA
GTAAGAACTCTTTACCACCCGTCAAACTTCACTGCTCAAGTAAGAACTCT
TCTGCAATTCTGTTCAATTGACAGAATGTGTTTTACACGATGtgtgttgg
aaagataattttgcgTGGCTGaataaaatactttcaaaaattaatgaaaa
cgTATTGTACTGTTTTCTCTTCTTCATCTTTTCAGTGTTGGCAGAAGACG
CGATCAAAGCGGCGCTGAAAGATTAtcattccaaacaacaaaagaaagct
GCATCAGCATAATTTCCAATACAAGCCATTCTTTCGTTTATTTATCCATT
TACTGCAACAACCCTTTtgtattttaaaatgaaatttagtTTTTGTATAT
ACGTAACGAAGCGTGGAGGTCTTTTATGTAACATTGTAAAACTTATCTTG
TTTTCAGGTTTCATTCTTTTTGAACTGAAGATGGTATTATAAAGAAATGA
CTCTAAATGAACGATTTCTCCTTCCATTTTCTATTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025769XLOC_025769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041869-exon-sc0003056-1491911889:6440..6647TCONS_00041869-exon-sc0003056-1491911889:6440..6647Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1510915933:6440..6647TCONS_00041869-exon-sc0003056-1510915933:6440..6647Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1575043694:6440..6647TCONS_00041869-exon-sc0003056-1575043694:6440..6647Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1491911889:6794..6872TCONS_00041869-exon-sc0003056-1491911889:6794..6872Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1510915933:6794..6872TCONS_00041869-exon-sc0003056-1510915933:6794..6872Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1575043694:6794..6872TCONS_00041869-exon-sc0003056-1575043694:6794..6872Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1491911889:7175..7479TCONS_00041869-exon-sc0003056-1491911889:7175..7479Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1510915933:7175..7479TCONS_00041869-exon-sc0003056-1510915933:7175..7479Clytia hemisphaericaexon
TCONS_00041869-exon-sc0003056-1575043694:7175..7479TCONS_00041869-exon-sc0003056-1575043694:7175..7479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003056supercontigsc0003056:6440..7479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
205.211	193.512	314.341	333.567	206.49	161.197	128.381	140.815	158.079	138.544	161.091	169.591	136.056	136.962	95.6828	103.904	181.012	200.416	80.9746	76.4475	263.678	264.322	140.631	136.244	202.112	200.386	137.344	123.855	79.4971	76.0223
Blast
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BLAST of TCONS_00041869 vs. Swiss-Prot (Human)
Match: ISCU (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 2.445e-41
Identity = 69/88 (78.41%), Postives = 74/88 (84.09%), Query Frame = 2 
Query:   98 IKVDDSGKIVDAKFKTFGCGSAIASSSLATEWVKGKQIGEASQIKNTDIAKELSLPPFKLHCSMLAEDAIKAALKDYHSKQQKKAASA 361
            I+VD+ GKIVDA+FKTFGCGSAIASSSLATEWVKGK + EA  IKNTDIAKEL LPP KLHCSMLAEDAIKAAL DY  KQ+ K   A
Sbjct:   77 IQVDEKGKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQEPKKGEA 164
The following BLAST results are available for this feature:
BLAST of TCONS_00041869 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISCU2.445e-4178.41Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
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