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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041868 ID=TCONS_00041868|Name=TCONS_00041868|organism=Clytia hemisphaerica|type=transcript|length=563bp
TAAGATTAGAAATTAGTAAGCTCAGATCACAAAGAAATAATCTTTAACAC
AACTTTAGAAAATTGATTAGATGAGATGGCATTAGCTTCATTATCCAAAC
AAGTTAAACTTTTGAGTGTCTTAAGACCTGCAATCACAGCTGCTGGTAGA
TCTTATCATGAAAACGTAAGTTGTGCTGCGAATGTTCTTTTGTATTAGTT
TTAAATGTATGAATTTGAAACCATTAAATGGGTACTTTTTTATTAAAGTC
GGATTTGGTGGTACcctgaaatacatgctgatgtcagcccgaaagctgat
tggcttaaccgACAGTTATAAGCGGTTTAAGAGtatagctaaaactttgt
tatgttttcaacagtcaacgaaagtgaatgaagacaaaatgtaaacaaaa
agattgcaaagaagttttcgaatatattcacaatagaatgtcttcattta
aaaatagaaacactctatttcattcaaaagaaaaagacattctttttttc
tttcagttttatgtaagtctttttgtgttgttgttgaacattatagtaaa
ttatattcacttt Run BLAST on NCBI transcript from alignment at sc0003056:1507..3790+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041868 ID=TCONS_00041868|Name=TCONS_00041868|organism=Clytia hemisphaerica|type=transcript|length=2284bp|location=Sequence derived from alignment at sc0003056:1507..3790+ (Clytia hemisphaerica)
TAAGATTAGAAATTAGTAAGCTCAGGTAAGATTATTATTCTTACATCTCT
Attgtaaatttttaactttttggacctaccccggtggaggtcctataaat
taaccttcgttcgttcgcaaatttgggcaaaaaaacggctaaaaaacagg
ttttttggactttgtgaaaaacttcatcattaattttttctgattttttt
gcatgaaagtagggtcccatcataggtaaaagatggctcaagcagatttt
tgcaaaaaaattttgttggctcaaaaaacgcatgtttatctataagaatc
actattaataagcatacatcaatgttcttagtcaaattactcactttttt
tatgagatagatgtttttttttgctgatgagggcttacttttgaagaata
tgtgtgtttagacatgaaattttggttgcttggcgtgttttcatagaaaa
actggccaaattcgatatttctttataagcacattatcaattatttaggt
attagcttttctcgagattagctctttcattctttatgattttttgcaca
aagatgcataactttaaaccctcgaatgtgacgaagcccgattttcgaaa
aagaatgtttttgggcaattttgggccaaaaaacggctttatattggatc
attgtttttttctgattttttgcatgaaagtaggtaaaagatgactcaag
cagatttttgtaaaaaacaaatttttcagctcaaaaaacgcatgtttatc
tataagaatcactattaataagcatacatcaatgttcttagccaaattac
tcaattttttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagagcat
gaaattttggtttctaaacgtttttttatatgaaacaaacgactaatttt
aatagatcgtcactatttgtgttctgaatgattgtttaatgcaGCCCTCG
AAATTCAAGTAAAAGTAAGTCGGCACGTAAGTGCCGTCCAAATCCGTCCG
AaggccggcaaaattttgccgacctaagCTTGTTTTTAGGTCGGCAATGC
CGATCTGAGCTatattttaggtcggcaaagttgtttaaaggctacggcaa
tgtttgtttttttatttgagtgcGATATGGTTCTTATTAGAGACTTTCAA
GTTTCGCGAGCTTGGGAAGTTCCCTCTAAGACGAATAAagattgtttttc
tcttttaataCTTTTTGCTGTTAAGGTCGGCTTTGCTGACCTAAAAGATA
ACTTATGGTCGGCTGCCGAGAGAATCAATGAATATGGTCGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGAGAGAATCAATGAATAT
GGTCGGCAATGAACTGCCGACCATACGCACTCTTTGGTCGGCTTTTAGGT
CGGCActgccgaatgccgacctgaaaTTCGAGGGCTGTAATGGTCAcact
cacgtagatatcaattatatatgtgttaaatgcataaccaggtaggtcca
taaaagtatcacttgttatattttctttttctttgattcttTACAGATCA
CAAAGAAATAATCTTTAACACAACTTTAGAAAATTGATTAGATGAGATGG
CATTAGCTTCATTATCCAAACAAGTTAAACTTTTGAGTGTCTTAAGACCT
GCAATCACAGCTGCTGGTAGATCTTATCATGAAAACGTAAGTTGTGCTGC
GAATGTTCTTTTGTATTAGTTTTAAATGTATGAATTTGAAACCATTAAAT
GGGTACTTTTTTATTAAAGTCGGATTTGGTGGTACcctgaaatacatgct
gatgtcagcccgaaagctgattggcttaaccgACAGTTATAAGCGGTTTA
AGAGtatagctaaaactttgttatgttttcaacagtcaacgaaagtgaat
gaagacaaaatgtaaacaaaaagattgcaaagaagttttcgaatatattc
acaatagaatgtcttcatttaaaaatagaaacactctatttcattcaaaa
gaaaaagacattctttttttctttcagttttatgtaagtctttttgtgtt
gttgttgaacattatagtaaattatattcacttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041868-exon-sc0003056-1491911889:1507..1531 | TCONS_00041868-exon-sc0003056-1491911889:1507..1531 | Clytia hemisphaerica | exon |
| TCONS_00041868-exon-sc0003056-1510915933:1507..1531 | TCONS_00041868-exon-sc0003056-1510915933:1507..1531 | Clytia hemisphaerica | exon |
| TCONS_00041868-exon-sc0003056-1575043694:1507..1531 | TCONS_00041868-exon-sc0003056-1575043694:1507..1531 | Clytia hemisphaerica | exon |
| TCONS_00041868-exon-sc0003056-1491911889:3253..3790 | TCONS_00041868-exon-sc0003056-1491911889:3253..3790 | Clytia hemisphaerica | exon |
| TCONS_00041868-exon-sc0003056-1510915933:3253..3790 | TCONS_00041868-exon-sc0003056-1510915933:3253..3790 | Clytia hemisphaerica | exon |
| TCONS_00041868-exon-sc0003056-1575043694:3253..3790 | TCONS_00041868-exon-sc0003056-1575043694:3253..3790 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003056 | supercontig | sc0003056:1507..3790 + |
Blast
The following BLAST results are available for this feature:
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