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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041867 ID=TCONS_00041867|Name=TCONS_00041867|organism=Clytia hemisphaerica|type=transcript|length=1199bp
CCGACAGCCGCAATCCTCACATTGTAAAGGTATTGATGTCTGGAGGTATA
TCCTGTGACCGAAATTGTTTAGGGTTTGGTACCAGAGAAATCTGCGCTCA
TACTTTGGGAGTGGCTATGAAAGAAGACATCGTACCTCGATACATTCATT
GGTTCATGGAGAAAAAATTTACTGGAAACCTGACAAAGCTCACCACCTTC
AACGTCAACCCTGAAGCCGGCAGGAAAAAGCCTAAAAGAAAACGAAATCG
ACCGAAATCTCCTGACAATCTTCATCAGCACCAATCAACTTCTGTGGCGA
ATAAAGAAAACCTTGTTAACACTCTCGGTGGTGTTTCGTCGACCCTTGGT
AACCCTCTCGGTGGTGGTTCGTCGACTCTTGGTAACGCTCTCGGTGGTGG
TTCGTCGACCCTTGGTAACCCTCTCGGTGGTGGTTCGTCGACCCTTGGCA
AACCTCTCAGTGGTGTTTCGCCAACCCTTGGTAACGCTCTCGGTGGTGGT
TCGTCGACCCTTGGTAACCCTCTCAGTGGTTGTACGTCGACCCTTGGTAA
CCCTCTCAGTGGTGGTTCGTCGACCCTTGGTGACATCCTATGTAATGATG
AGGCCACAATAAATAATTTTAGTGTTTCTTCGAATGGGATGAAACTTCTC
TTTACAAAAAACAAGCTGCCCCCTAAGCCAAAGTATGTTGAAACAACAAC
CACTGATTTTGAACTCCTTCAAATTCACGGCAAAATTTCTGTGTGTGCTG
GATGTACTGGTAGATTGAACGATGGTCCAGAGGGTAAAAATCTTGTTCAA
TTTGATAAGGAACTGTGTATCCGTCACAAAGAGCGCGACACGTTCTTGGT
AAAAGGACAGTCACCATTCTGGAAGAAAACTTTCCAAGCAAAACATTATC
ACATGAACGAAGCGTGTATCCGATCAAGGAACCCATCATTTGATCCAAGT
AAAATCTCTTTGTCAGCTTTGCCATTTACATTGACAAAGAGTCTGATAGA
TTTCCTCCGTGAacgattgttttgatttggtaAATTTCCACtctttcatt
ttatctttttgtagatttttaacAGTGCTGTTTATTGTGTTCTGATTTTC
TcccttttgtttattttgtctCAGTGCTTTCACATTTATTCAGAAAAGAT
AAGACGAGTTTTTCAAAATCCTAGTATTTTTGCCTTCTTACAAGTCGAT Run BLAST on NCBI protein sequence of TCONS_00041867-protein >TCONS_00041867-protein ID=TCONS_00041867-protein|Name=TCONS_00041867-protein|organism=Clytia hemisphaerica|type=polypeptide|length=340bp
DSRNPHIVKVLMSGGISCDRNCLGFGTREICAHTLGVAMKEDIVPRYIHW
FMEKKFTGNLTKLTTFNVNPEAGRKKPKRKRNRPKSPDNLHQHQSTSVAN
KENLVNTLGGVSSTLGNPLGGGSSTLGNALGGGSSTLGNPLGGGSSTLGK
PLSGVSPTLGNALGGGSSTLGNPLSGCTSTLGNPLSGGSSTLGDILCNDE
ATINNFSVSSNGMKLLFTKNKLPPKPKYVETTTTDFELLQIHGKISVCAG
CTGRLNDGPEGKNLVQFDKELCIRHKERDTFLVKGQSPFWKKTFQAKHYH
MNEACIRSRNPSFDPSKISLSALPFTLTKSLIDFLRERLF Run BLAST on NCBI transcript from alignment at sc0003055:13349..14547 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041867 ID=TCONS_00041867|Name=TCONS_00041867|organism=Clytia hemisphaerica|type=transcript|length=1199bp|location=Sequence derived from alignment at sc0003055:13349..14547 (Clytia hemisphaerica)
ATCGACTTGTAAGAAGGCAAAAATACTAGGATTTTGAAAAACTCGTCTTA
TCTTTTCTGAATAAATGTGAAAGCACTGagacaaaataaacaaaagggAG
AAAATCAGAACACAATAAACAGCACTgttaaaaatctacaaaaagataaa
atgaaagaGTGGAAATTtaccaaatcaaaacaatcgtTCACGGAGGAAAT
CTATCAGACTCTTTGTCAATGTAAATGGCAAAGCTGACAAAGAGATTTTA
CTTGGATCAAATGATGGGTTCCTTGATCGGATACACGCTTCGTTCATGTG
ATAATGTTTTGCTTGGAAAGTTTTCTTCCAGAATGGTGACTGTCCTTTTA
CCAAGAACGTGTCGCGCTCTTTGTGACGGATACACAGTTCCTTATCAAAT
TGAACAAGATTTTTACCCTCTGGACCATCGTTCAATCTACCAGTACATCC
AGCACACACAGAAATTTTGCCGTGAATTTGAAGGAGTTCAAAATCAGTGG
TTGTTGTTTCAACATACTTTGGCTTAGGGGGCAGCTTGTTTTTTGTAAAG
AGAAGTTTCATCCCATTCGAAGAAACACTAAAATTATTTATTGTGGCCTC
ATCATTACATAGGATGTCACCAAGGGTCGACGAACCACCACTGAGAGGGT
TACCAAGGGTCGACGTACAACCACTGAGAGGGTTACCAAGGGTCGACGAA
CCACCACCGAGAGCGTTACCAAGGGTTGGCGAAACACCACTGAGAGGTTT
GCCAAGGGTCGACGAACCACCACCGAGAGGGTTACCAAGGGTCGACGAAC
CACCACCGAGAGCGTTACCAAGAGTCGACGAACCACCACCGAGAGGGTTA
CCAAGGGTCGACGAAACACCACCGAGAGTGTTAACAAGGTTTTCTTTATT
CGCCACAGAAGTTGATTGGTGCTGATGAAGATTGTCAGGAGATTTCGGTC
GATTTCGTTTTCTTTTAGGCTTTTTCCTGCCGGCTTCAGGGTTGACGTTG
AAGGTGGTGAGCTTTGTCAGGTTTCCAGTAAATTTTTTCTCCATGAACCA
ATGAATGTATCGAGGTACGATGTCTTCTTTCATAGCCACTCCCAAAGTAT
GAGCGCAGATTTCTCTGGTACCAAACCCTAAACAATTTCGGTCACAGGAT
ATACCTCCAGACATCAATACCTTTACAATGTGAGGATTGCGGCTGTCGG Coding sequence (CDS) from alignment at sc0003055:13349..14547 >TCONS_00041867 ID=TCONS_00041867|Name=TCONS_00041867|organism=Clytia hemisphaerica|type=CDS|length=1023bp|location=Sequence derived from alignment at sc0003055:13349..14547 (Clytia hemisphaerica)
tcaaaacaatcgtTCACGGAGGAAATCTATCAGACTCTTTGTCAATGTAA
ATGGCAAAGCTGACAAAGAGATTTTACTTGGATCAAATGATGGGTTCCTT
GATCGGATACACGCTTCGTTCATGTGATAATGTTTTGCTTGGAAAGTTTT
CTTCCAGAATGGTGACTGTCCTTTTACCAAGAACGTGTCGCGCTCTTTGT
GACGGATACACAGTTCCTTATCAAATTGAACAAGATTTTTACCCTCTGGA
CCATCGTTCAATCTACCAGTACATCCAGCACACACAGAAATTTTGCCGTG
AATTTGAAGGAGTTCAAAATCAGTGGTTGTTGTTTCAACATACTTTGGCT
TAGGGGGCAGCTTGTTTTTTGTAAAGAGAAGTTTCATCCCATTCGAAGAA
ACACTAAAATTATTTATTGTGGCCTCATCATTACATAGGATGTCACCAAG
GGTCGACGAACCACCACTGAGAGGGTTACCAAGGGTCGACGTACAACCAC
TGAGAGGGTTACCAAGGGTCGACGAACCACCACCGAGAGCGTTACCAAGG
GTTGGCGAAACACCACTGAGAGGTTTGCCAAGGGTCGACGAACCACCACC
GAGAGGGTTACCAAGGGTCGACGAACCACCACCGAGAGCGTTACCAAGAG
TCGACGAACCACCACCGAGAGGGTTACCAAGGGTCGACGAAACACCACCG
AGAGTGTTAACAAGGTTTTCTTTATTCGCCACAGAAGTTGATTGGTGCTG
ATGAAGATTGTCAGGAGATTTCGGTCGATTTCGTTTTCTTTTAGGCTTTT
TCCTGCCGGCTTCAGGGTTGACGTTGAAGGTGGTGAGCTTTGTCAGGTTT
CCAGTAAATTTTTTCTCCATGAACCAATGAATGTATCGAGGTACGATGTC
TTCTTTCATAGCCACTCCCAAAGTATGAGCGCAGATTTCTCTGGTACCAA
ACCCTAAACAATTTCGGTCACAGGATATACCTCCAGACATCAATACCTTT
ACAATGTGAGGATTGCGGCTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041867-exon-sc0003055-1491911889:13349..14547 | TCONS_00041867-exon-sc0003055-1491911889:13349..14547 | Clytia hemisphaerica | exon |
| TCONS_00041867-exon-sc0003055-1510915933:13349..14547 | TCONS_00041867-exon-sc0003055-1510915933:13349..14547 | Clytia hemisphaerica | exon |
| TCONS_00041867-exon-sc0003055-1575043694:13349..14547 | TCONS_00041867-exon-sc0003055-1575043694:13349..14547 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003055 | supercontig | sc0003055:13349..14547 . |
Blast
The following BLAST results are available for this feature:
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