TCONS_00041855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041855
Unique NameTCONS_00041855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1283

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041855 ID=TCONS_00041855|Name=TCONS_00041855|organism=Clytia hemisphaerica|type=transcript|length=1283bp
GGAGACTCTTACATTTGTTCCTTTCGTAGATTGTCGGTGAAATTACCCCA
CCATATCATTGATTGATGGGGCAATTTCACAGAGCAAGAttgtatttttt
cttcaatctcgTCTACTGGAAGTTGTTTTCTCCAACTAAACCGTACCAAG
GGAATGGGTCCAGTTGGTAGATGCGAAAGGAGTGCTGGCTTGAGTTGGGT
CCATTCTGGATCCATTGCGAAACGTTTAAAAGACAAGTCAACTTCCTCGT
TGACTAGCTCAAACTTGTAAGCGTGCGGCTCAGTGTGATGAGACGGTGTT
CTTATGTTGGGCATAAACCAGTCCCGGTAATTGAATACATATTTCAGTAA
AGAAACACTCGTGTTTTGTTTCTGAAAGGATTCCTTAATCGTTTGAAGCA
GGTGATCAATTGTGAATACGTCTTTCTTGTTTAAGGTCGTTGAAATGTTA
CTGAATGTCTGATAAGattaaaaatgtataaaaagagATTAAGTTTTGTA
CGTCCATCGCCTATAACTTAAATCGACAAATGCAAAAGTCTTTTctattt
tggaagaaaattaaaacaaattgaTGAAGaggaaaaattatgaaaataat
ttccttACACTATCGATATCTTCGTGGGTATGTCCAACAAGCAAGTAAGA
AAGACGAACCTAATGTCGAATCAATatgtttattttcattcaaCCAAAGG
ATACATTCTTTTGTAACACATCATCTTTTTATTTGCTCAAGAACATTTTA
TGCATAAGTTTAAATTGGTATAAACGCAATTATCCATTTGTACATAAAGA
ACTGGTGGAAGAACTCCATCCTGAATGAAACGAGAAGTAAATATCTCATT
AAAGTCCGAAAAGATCATTGGGAAATACCattgttttaaataaaaaatac
tttaCTTATTTTGCTTTCCAAACTCCAATGTACAAAAGAAACCGACACAC
AGAAATGAAAGATTGAAAGCTTGATAGCCAAAAACTCTAAAGTGAAGATA
AGCGATTTTTATGGTATCCATTTTTTTGCTTTACAAAATGTTACATAACA
ATATCATATACCttttatgattattttgtttcgTTTTTCTAGAGGATTAG
TGAAGAACACCTGTTTCTTAACATCGAAAATAAATTGTTTACCATGAAGG
GCAGATAAATTGTGTTATGTTAATTCTTTTGAAATCCTACTTGAACAAAA
ACCTGTTTATTCTATTGATGAAGGGAATGACTTCACACAAAAAGCAGTTT
TGAAACGACAAAGGTCCATTATTTGGAGCATAA
Run BLAST on NCBI

transcript from alignment at sc0003049:11519..13050-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041855 ID=TCONS_00041855|Name=TCONS_00041855|organism=Clytia hemisphaerica|type=transcript|length=1532bp|location=Sequence derived from alignment at sc0003049:11519..13050- (Clytia hemisphaerica)
GGAGACTCTTACATTTGTTCCTTTCGTAGATTGTCGGTGAAATTACCCCA
CCATATCATTGATTGATGGGGCAATTTCACAGAGCAAGATTGTATTTTTT
CTTCAATCTCGTCTACTGGAAGTTGTTTTCTCCAACTAAACCGTACCAAG
GGAATGGGTCCAGTTGGTAGATGCGAAAGGAGTGCTGGCTTGAGTTGGGT
CCATTCTGGATCCATTGCGAAACGTTTAAAAGACAAGTCAACTTCCTCGT
TGACTAGCTCAAACTTGTAAGCGTGCGGCTCAGTGTGATGAGACGGTGTT
CTTATGTTGGGCATAAACCAGTCCCGGTAATTGAATACATATTTCAGTAA
AGAAACACTCGTGTTTTGTTTCTGAAAGGATTCCTTAATCGTTTGAAGCA
GGTGATCAATTGTGAATACGTCTTTCTTGTTTAAGGTCGTTGAAATGTTA
CTGAATGTCTGATAAGATTAAAAATGTATAAAAAGAGATTAAGTTTTGTA
CGTCCATCGCCTATAACTTAAATCGACAAATGCAAAAGTCTTTTCTATTT
TGGAAGAAAATTAAAACAAATTGATGAAGAGGAAAAATTATGAAAATAAT
TTCCTTACACTATCGATATCTTCGTGGGTATGTCCAACAAGCAAGTAAGA
AAGACGAACCTAATGTCGAATCAATATGTTTATTTTCATTCAACCAAAGG
ATACATTCTTTTGTAACACATCATCTTTTTATTTGCTCAAGAACATTTTA
TGCATAAGTTTAAATTGGTATAAACGGTGCGTTTTAAGAATTTACGAGCA
GAAACTAAAATGTTGATATCATTTCGGTACCATTTGCCGACTGTAACTTT
TTACAGTAATTTTATAGTAATTGGTTTTCTTTTCTTCATTAATTAGGCAT
TAATTAATTAAACTATATTCAAGTCTTGATGAGTATTGTTGTATTTATAT
ACCTTTTTAACGATTCTTTTTAACACCAAAAACGCAAAAAAGGCTAATAA
AAACTGATTTTTATTCTCTCTCCAGCAATTATCCATTTGTACATAAAGAA
CTGGTGGAAGAACTCCATCCTGAATGAAACGAGAAGTAAATATCTCATTA
AAGTCCGAAAAGATCATTGGGAAATACCATTGTTTTAAATAAAAAATACT
TTACTTATTTTGCTTTCCAAACTCCAATGTACAAAAGAAACCGACACACA
GAAATGAAAGATTGAAAGCTTGATAGCCAAAAACTCTAAAGTGAAGATAA
GCGATTTTTATGGTATCCATTTTTTTGCTTTACAAAATGTTACATAACAA
TATCATATACCTTTTATGATTATTTTGTTTCGTTTTTCTAGAGGATTAGT
GAAGAACACCTGTTTCTTAACATCGAAAATAAATTGTTTACCATGAAGGG
CAGATAAATTGTGTTATGTTAATTCTTTTGAAATCCTACTTGAACAAAAA
CCTGTTTATTCTATTGATGAAGGGAATGACTTCACACAAAAAGCAGTTTT
GAAACGACAAAGGTCCATTATTTGGAGCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025755XLOC_025755Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041855-exon-sc0003049-1575043694:12275..13050TCONS_00041855-exon-sc0003049-1575043694:12275..13050Clytia hemisphaericaexon
TCONS_00041855-exon-sc0003049-1575043694:11519..12025TCONS_00041855-exon-sc0003049-1575043694:11519..12025Clytia hemisphaericaexon
TCONS_00041855-exon-sc0003049-1510915933:12275..13050TCONS_00041855-exon-sc0003049-1510915933:12275..13050Clytia hemisphaericaexon
TCONS_00041855-exon-sc0003049-1510915933:11519..12025TCONS_00041855-exon-sc0003049-1510915933:11519..12025Clytia hemisphaericaexon
TCONS_00041855-exon-sc0003049-1491911889:12275..13050TCONS_00041855-exon-sc0003049-1491911889:12275..13050Clytia hemisphaericaexon
TCONS_00041855-exon-sc0003049-1491911889:11519..12025TCONS_00041855-exon-sc0003049-1491911889:11519..12025Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:11519..13050 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.158395	0	0	0.109776	0.0833806	0.247316	0.0902599	0.0840612	0.161976	0	0	0.0409086	0.253915	0.15982	0.139487	0.407688	0.552227	0.647932	0.528635	0.228297	0.698649	0.652255	0	0.650309	0	0.13795	0	0.263777	0.122612	0.165298
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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