TCONS_00041854 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041854
Unique NameTCONS_00041854
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041854 ID=TCONS_00041854|Name=TCONS_00041854|organism=Clytia hemisphaerica|type=transcript|length=711bp
AAGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGACAAAAGAAT
ACGGTTGACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGA
AACAAAAAACGATACATTAGATGATGAAACAACTCAAGCTACAGCTACGG
ATAATGATCTTATGAATGACAATGAAATTCCAGAGCCCACGTCAAGTAAT
AAACCAAAGCATGAAGAAAATAAAAAAGAAGAGCCGTgtatttcaaagaa
acaaaaaaattcgaagaaaaaagaaaaaactccaAGAAAAAGTGAACCGA
ACGTAGAGAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTAT
ACAGAAAAGCAGAATTTAGATATCATCAAAGTTGTCGAGGACGAATTGCT
TCCAATTATGGAAGTAAAAGTTGGCCAATGGGTGATGGTTAAGTACAACA
CGAAGAGATTCCTCGGTATGGtggaaaaaattaaagatggcgaaGCTCTT
GTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAAACCACAAGACCTGGA
AAAAGAGTgcgacacccttttttatgAGGAAATTTATAAGTCTCCTGTTA
CTCCTATCTTGACAAAAGTAGGTCGGGCGTTACTTTGGAAGTATGAGGTA
TGAGAAATTATTggaatacactcttttttataagagccacgaattttgtt
ttcttattttt
Run BLAST on NCBI

protein sequence of TCONS_00041854-protein

>TCONS_00041854-protein ID=TCONS_00041854-protein|Name=TCONS_00041854-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
DTHNFMKEQNEKGQKNTVDFQVDKASEATSLEETKNDTLDDETTQATATD
NDLMNDNEIPEPTSSNKPKHEENKKEEPCISKKQKNSKKKEKTPRKSEPN
VEKQGTKKGKNKRAKYTEKQNLDIIKVVEDELLPIMEVKVGQWVMVKYNT
KRFLGMVEKIKDGEALVCCLKKAFPDEKPQDLEKECDTLFYEEIYKSPVT
PILTKVGRALLWKYEV
Run BLAST on NCBI

transcript from alignment at sc0003049:1802..4211-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041854 ID=TCONS_00041854|Name=TCONS_00041854|organism=Clytia hemisphaerica|type=transcript|length=2410bp|location=Sequence derived from alignment at sc0003049:1802..4211- (Clytia hemisphaerica)
AAGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGACAAAAGGTA
TTAAACGGATAATGTAGATATACTATACACTACTTGAGTCTTGTTGAATG
GAGGTTTTTATATATAACGAGTATTGGAAAAATATTGATAACAGGAATGC
CTTCTTTTTTCCAGAATACGGTTGACTTTCAAGTAGATAAAGCAAGCGAA
GCAACATCCTTAGAGGAAACAAAAAACGATGTGAGTTTTTTATTGTTTGA
AATTAATCAGCTTTAGAAGCTTTTTTTTTAATTTAATCACATAATTTGAA
TCATGTGCACAGTTCGATGGTTCACGTGATTCATCCTTTTTAGTGCAAAA
TCAATAGATTTTTAAAAATCATGATAAAAGTTAGTTTTTTATTGCGAAAT
CTTTCTTCGTGTGTTTACTTTTCCCTTTTTGTTTCTTGTTTTTAAATAGA
CATTAGATGATGAAACAACTCAAGCTACAGCTACGGATAATGATCTTATG
AATGACGTAAGTGTTCTTTCTTCGGAACGTTTTTGCTCAAACATATGCTA
CCTTTAAAGAGTTTATTAGATCAATTTTATTTTCAAAGATTCTATACTAT
AATAAATGCTATAATATTGTCAATTTAAATGTTTATGTATAGAATGAAAT
TCCAGAGCCCACGTCAAGTAATAAACCAAAGCATGAAGAAAATGTACGTA
TTTTTAAGACTCACACCGTTTATTCAACTTTTTGCAGCACGAAAATAAAG
ACAAAAATAAAGTAATTTCAATCCCTACTGTTCTTAAAACTCACAAGCGT
AAATATCGCATTTAACAACCAAAAATTCAATTTCATCAGATTCTTTGTTG
AATAAAGTTTTCTTGCTAAATTTTTCCTTACAGAAAAAAGAAGAGCCGTG
TATTTCAAAGAAACAAAAAAATTCGAAGAAAAAAGAAAAAACTCCAAGAA
AAAGTGAACCGAACGTAGAGAAGCAAGGAACGAAGAAAGGAAAGAATAAA
CGCGCAAAGTATACAGAAAAGCAGAATTTAGATATCATCAAAGTTGTCGA
GGTAAAGATAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTATGCTTAAGAATTATTATGCTTTTGATTCANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTAT
TTCAGGCTAGCGTATATGCTTATGTTATGCTTAGGAAATCTGCAAATCTG
AGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAAAACATGTAATT
TTTTATAAGAACGTTGAGGCTGAGATTTGCTCAAAAATTAATTAATGCTT
TATTAAAATTGTGTCCCAGGTACACAATTTATTTTATTAGTTTTTATTTC
AACTTCCAAACGATCTCTAGGCTGCACACATCCCCTCTGATAAGTTATGA
TATATCAAAACTAATTTGGGGATGCATGCAGCCTAAACGATCTCGTGTTG
AAACAACATTTTTTGGGCGCCAAAACAACATTCCGTGCTTANAAAACGTG
TACAGTATTTGAAATGAACTCTTACGCAAAGGAAAAAAACTTAGTTACAA
TAGAACAAAAGTTAGAACAAAAGAATTTAAAACAAAGCATTCTCCGGTAT
TCTTTTTCGATGAAACCATACTTCTTTTTTACTTATAGGACGAATTGCTT
CCAATTATGGAAGTAAAAGTTGGCCAATGGGTGATGGTTAAGTACAACAC
GAAGAGATTCCTCGGTATGGTGGAAAAAATTAAAGATGGCGAAGCTCTTG
TGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAAACCACAAGACCTGGAA
AAAGAGTGCGACACCCTTTTTTATGAGGAAATTTATAAGTCTCCTGTTAC
TCCTATCTTGACAAAAGTAGGTCGGGCGTTACTTTGGAAGTATGAGGTAT
GAGAAATTATTGGAATACACTCTTTTTTATAAGAGCCACGAATTTTGTTT
TCTTATTTTT

Coding sequence (CDS) from alignment at sc0003049:1802..4211-

>TCONS_00041854 ID=TCONS_00041854|Name=TCONS_00041854|organism=Clytia hemisphaerica|type=CDS|length=3906bp|location=Sequence derived from alignment at sc0003049:1802..4211- (Clytia hemisphaerica)
GACGAATTGCTTCCAATTATGGAAGTAAAAGTTGGCCAATGGGTGATGGT
TAAGTACAACACGAAGAGATTCCTCGGTATGGTGGAAAAAATTAAAGATG
GCGAAGCTCTTGTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAAACCA
CAAGACCTGGAAAAAGAGTGCGACACCCTTTTTTATGAGGAAATTTATAA
GTCTCCTGTTACTCCTATCTTGACAAAAGTAGGTCGGGCGTTACTTTGGA
AGTATGAGGTATGAAAAAAAGAAGAGCCGTGTATTTCAAAGAAACAAAAA
AATTCGAAGAAAAAAGAAAAAACTCCAAGAAAAAGTGAACCGAACGTAGA
GAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTATACAGAAA
AGCAGAATTTAGATATCATCAAAGTTGTCGAGAATGAAATTCCAGAGCCC
ACGTCAAGTAATAAACCAAAGCATGAAGAAAATACATTAGATGATGAAAC
AACTCAAGCTACAGCTACGGATAATGATCTTATGAATGACAATACGGTTG
ACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGAAACAAAA
AACGATGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGACAAAA
GGACGAATTGCTTCCAATTATGGAAGTAAAAGTTGGCCAATGGGTGATGG
TTAAGTACAACACGAAGAGATTCCTCGGTATGGTGGAAAAAATTAAAGAT
GGCGAAGCTCTTGTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAAACC
ACAAGACCTGGAAAAAGAGTGCGACACCCTTTTTTATGAGGAAATTTATA
AGTCTCCTGTTACTCCTATCTTGACAAAAGTAGGTCGGGCGTTACTTTGG
AAGTATGAGGTATGAAAAAAAGAAGAGCCGTGTATTTCAAAGAAACAAAA
AAATTCGAAGAAAAAAGAAAAAACTCCAAGAAAAAGTGAACCGAACGTAG
AGAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTATACAGAA
AAGCAGAATTTAGATATCATCAAAGTTGTCGAGAATGAAATTCCAGAGCC
CACGTCAAGTAATAAACCAAAGCATGAAGAAAATACATTAGATGATGAAA
CAACTCAAGCTACAGCTACGGATAATGATCTTATGAATGACAATACGGTT
GACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGAAACAAA
AAACGATGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGACAAA
AGGACGAATTGCTTCCAATTATGGAAGTAAAAGTTGGCCAATGGGTGATG
GTTAAGTACAACACGAAGAGATTCCTCGGTATGGTGGAAAAAATTAAAGA
TGGCGAAGCTCTTGTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAAAC
CACAAGACCTGGAAAAAGAGTGCGACACCCTTTTTTATGAGGAAATTTAT
AAGTCTCCTGTTACTCCTATCTTGACAAAAGTAGGTCGGGCGTTACTTTG
GAAGTATGAGGTATGAAAAAAAGAAGAGCCGTGTATTTCAAAGAAACAAA
AAAATTCGAAGAAAAAAGAAAAAACTCCAAGAAAAAGTGAACCGAACGTA
GAGAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTATACAGA
AAAGCAGAATTTAGATATCATCAAAGTTGTCGAGAATGAAATTCCAGAGC
CCACGTCAAGTAATAAACCAAAGCATGAAGAAAATACATTAGATGATGAA
ACAACTCAAGCTACAGCTACGGATAATGATCTTATGAATGACAATACGGT
TGACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGAAACAA
AAAACGATGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGACAA
AAGGACGAATTGCTTCCAATTATGGAAGTAAAAGTTGGCCAATGGGTGAT
GGTTAAGTACAACACGAAGAGATTCCTCGGTATGGTGGAAAAAATTAAAG
ATGGCGAAGCTCTTGTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAAA
CCACAAGACCTGGAAAAAGAGTGCGACACCCTTTTTTATGAGGAAATTTA
TAAGTCTCCTGTTACTCCTATCTTGACAAAAGTAGGTCGGGCGTTACTTT
GGAAGTATGAGGTATGAAAAAAAGAAGAGCCGTGTATTTCAAAGAAACAA
AAAAATTCGAAGAAAAAAGAAAAAACTCCAAGAAAAAGTGAACCGAACGT
AGAGAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTATACAG
AAAAGCAGAATTTAGATATCATCAAAGTTGTCGAGAATGAAATTCCAGAG
CCCACGTCAAGTAATAAACCAAAGCATGAAGAAAATACATTAGATGATGA
AACAACTCAAGCTACAGCTACGGATAATGATCTTATGAATGACAATACGG
TTGACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGAAACA
AAAAACGATGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGACA
AAAGGACGAATTGCTTCCAATTATGGAAGTAAAAGTTGGCCAATGGGTGA
TGGTTAAGTACAACACGAAGAGATTCCTCGGTATGGTGGAAAAAATTAAA
GATGGCGAAGCTCTTGTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAAA
ACCACAAGACCTGGAAAAAGAGTGCGACACCCTTTTTTATGAGGAAATTT
ATAAGTCTCCTGTTACTCCTATCTTGACAAAAGTAGGTCGGGCGTTACTT
TGGAAGTATGAGGTATGAAAAAAAGAAGAGCCGTGTATTTCAAAGAAACA
AAAAAATTCGAAGAAAAAAGAAAAAACTCCAAGAAAAAGTGAACCGAACG
TAGAGAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTATACA
GAAAAGCAGAATTTAGATATCATCAAAGTTGTCGAGAATGAAATTCCAGA
GCCCACGTCAAGTAATAAACCAAAGCATGAAGAAAATACATTAGATGATG
AAACAACTCAAGCTACAGCTACGGATAATGATCTTATGAATGACAATACG
GTTGACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGAAAC
AAAAAACGATGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGAC
AAAAGGACGAATTGCTTCCAATTATGGAAGTAAAAGTTGGCCAATGGGTG
ATGGTTAAGTACAACACGAAGAGATTCCTCGGTATGGTGGAAAAAATTAA
AGATGGCGAAGCTCTTGTGTGCTGTCTCAAAAAGGCCTTTCCTGATGAAA
AACCACAAGACCTGGAAAAAGAGTGCGACACCCTTTTTTATGAGGAAATT
TATAAGTCTCCTGTTACTCCTATCTTGACAAAAGTAGGTCGGGCGTTACT
TTGGAAGTATGAGGTATGAAAAAAAGAAGAGCCGTGTATTTCAAAGAAAC
AAAAAAATTCGAAGAAAAAAGAAAAAACTCCAAGAAAAAGTGAACCGAAC
GTAGAGAAGCAAGGAACGAAGAAAGGAAAGAATAAACGCGCAAAGTATAC
AGAAAAGCAGAATTTAGATATCATCAAAGTTGTCGAGAATGAAATTCCAG
AGCCCACGTCAAGTAATAAACCAAAGCATGAAGAAAATACATTAGATGAT
GAAACAACTCAAGCTACAGCTACGGATAATGATCTTATGAATGACAATAC
GGTTGACTTTCAAGTAGATAAAGCAAGCGAAGCAACATCCTTAGAGGAAA
CAAAAAACGATGATACACATAATTTCATGAAAGAGCAAAACGAAAAAGGA
CAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025754XLOC_025754Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041854-proteinTCONS_00041854-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041854-exon-sc0003049-1575043694:4165..4211TCONS_00041854-exon-sc0003049-1575043694:4165..4211Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1575043694:3982..4047TCONS_00041854-exon-sc0003049-1575043694:3982..4047Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1575043694:3706..3762TCONS_00041854-exon-sc0003049-1575043694:3706..3762Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1575043694:3519..3569TCONS_00041854-exon-sc0003049-1575043694:3519..3569Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1575043694:3161..3328TCONS_00041854-exon-sc0003049-1575043694:3161..3328Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1575043694:1802..2123TCONS_00041854-exon-sc0003049-1575043694:1802..2123Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1510915933:4165..4211TCONS_00041854-exon-sc0003049-1510915933:4165..4211Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1510915933:3982..4047TCONS_00041854-exon-sc0003049-1510915933:3982..4047Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1510915933:3706..3762TCONS_00041854-exon-sc0003049-1510915933:3706..3762Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1510915933:3519..3569TCONS_00041854-exon-sc0003049-1510915933:3519..3569Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1510915933:3161..3328TCONS_00041854-exon-sc0003049-1510915933:3161..3328Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1510915933:1802..2123TCONS_00041854-exon-sc0003049-1510915933:1802..2123Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1491911889:4165..4211TCONS_00041854-exon-sc0003049-1491911889:4165..4211Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1491911889:3982..4047TCONS_00041854-exon-sc0003049-1491911889:3982..4047Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1491911889:3706..3762TCONS_00041854-exon-sc0003049-1491911889:3706..3762Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1491911889:3519..3569TCONS_00041854-exon-sc0003049-1491911889:3519..3569Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1491911889:3161..3328TCONS_00041854-exon-sc0003049-1491911889:3161..3328Clytia hemisphaericaexon
TCONS_00041854-exon-sc0003049-1491911889:1802..2123TCONS_00041854-exon-sc0003049-1491911889:1802..2123Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:1802..4211 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.141346	0.113494	0	0.115558	0.190612	0.451873	0.74181	0.701425	1.00977	0.876956	0.429606	0.335938	0.716836	0.371459	0.869157	1.03651	0.984503	1.10669	0.598519	0.981971	0.813363	0.838327	0.743237	0.737188	0.9153	1.41475	1.02085	0.830357	0.129999	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041854 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top