TCONS_00041835 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041835
Unique NameTCONS_00041835
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length716

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041835 ID=TCONS_00041835|Name=TCONS_00041835|organism=Clytia hemisphaerica|type=transcript|length=716bp
CACAATTTCAacctcaaaaattttcattgtggcaacaaactttcaaaata
tttgggATTTTGGGAAGCAATCTAGTCTAGATTATCCaatcaatgtaaaa
aatttGGTGGAAACAAGATTTTTTGTGAACTTTaagactttttcaaattt
tttcgcGTACGGGACAAGAAAAATTTCAGTTTTGTCCCGTACGCGACaga
caaatcaaaaaaataatttgaaaaagctAAACAAACAAAACATATAGTGT
CTTTTGATACATATAGGTAGACAAATTAAATAGGGGTGTAATCAGTTTTC
AGATGTTGactgatgttgaaaatttttaagtgTTGCGTACGGGACAAGTG
TGATATTTATTTCCTGTGAAAACGCTAAAGTCAAGGTGAGACTTGAAAAT
GATTTggcttttgaaatcaaagtattTGGAAATCGTCTTTCATATGCAAA
TGATAATCTGAAATAGTAAGAATAGAAATTGTTTAGGGTTTTCCATACAG
AAAGAGCCATATAGCTTTGTGATTAGAGATGTCGCGTACGGgataaattt
ttctaacacaGTTTCCAATAGCAATGAATTCTTTGTGAAGACAAAACTGT
CTcttgtatacacgtttttttttttataagaacaaactatataagaacat
aaggcttcgagcccaaaaatttaagaacattctaagaacatactaaggct
ttggagacttaaaaac
Run BLAST on NCBI

transcript from alignment at sc0003041:545..1260

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041835 ID=TCONS_00041835|Name=TCONS_00041835|organism=Clytia hemisphaerica|type=transcript|length=716bp|location=Sequence derived from alignment at sc0003041:545..1260 (Clytia hemisphaerica)
gtttttaagtctccaaagccttagtatgttcttagaatgttcttaaattt
ttgggctcgaagccttatgttcttatatagtttgttcttataaaaaaaaa
aacgtgtatacaagAGACAGTTTTGTCTTCACAAAGAATTCATTGCTATT
GGAAACtgtgttagaaaaatttatcCCGTACGCGACATCTCTAATCACAA
AGCTATATGGCTCTTTCTGTATGGAAAACCCTAAACAATTTCTATTCTTA
CTATTTCAGATTATCATTTGCATATGAAAGACGATTTCCAaatactttga
tttcaaaagccAAATCATTTTCAAGTCTCACCTTGACTTTAGCGTTTTCA
CAGGAAATAAATATCACACTTGTCCCGTACGCAAcacttaaaaattttca
acatcagtCAACATCTGAAAACTGATTACACCCCTATTTAATTTGTCTAC
CTATATGTATCAAAAGACACTATATGTTTTGTTTGTTTagctttttcaaa
ttatttttttgatttgtctGTCGCGTACGGGACAAAACTGAAATTTTTCT
TGTCCCGTACgcgaaaaaatttgaaaaagtcttAAAGTTCACAAAAAATC
TTGTTTCCACCaaattttttacattgattGGATAATCTAGACTAGATTGC
TTCCCAAAATcccaaatattttgaaagtttgttgccacaatgaaaatttt
tgaggtTGAAATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025741XLOC_025741Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041835-exon-sc0003041-1491911889:545..1260TCONS_00041835-exon-sc0003041-1491911889:545..1260Clytia hemisphaericaexon
TCONS_00041835-exon-sc0003041-1510915933:545..1260TCONS_00041835-exon-sc0003041-1510915933:545..1260Clytia hemisphaericaexon
TCONS_00041835-exon-sc0003041-1575043694:545..1260TCONS_00041835-exon-sc0003041-1575043694:545..1260Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003041supercontigsc0003041:545..1260 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.22654	7.08219	7.4206	9.25573	0.783764	0.453985	3.60497	2.06942	0.471505	2.09611	0.686177	0.597037	0.193124	0.312084	0	0.0436745	2.18986	2.60578	0.161544	0	16.9255	16.5987	3.85438	3.78267	0.0913782	0.474907	0.681692	0.342181	2.25406	2.47183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041835 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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