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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041834 ID=TCONS_00041834|Name=TCONS_00041834|organism=Clytia hemisphaerica|type=transcript|length=1544bp
NNGTCCTTAAAAATGTATGCCAATCTAGATGGAAAACTTGAAGTGAAAGT
TGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGAGAAAACTAATG
AACCTGTTAATCTAAACGTGGAAATAAGGTTGTTCATGACAAATATTATC
TCCACAATAGTACTTGGTGAAAGATACGAAAATATAGAAAACCCCACATT
TCAAAAGATATTAGAATTAAATAACTATTTACATTATGCTGTATATCATG
GTGATCCGATTTCAATTTCAAAATGGCAGAAATATCTTCCTATTCACTCG
ACTAGAATGTTATCAAGCTACTTAGCAAAGAGAGATGAACATTTCAGAAA
TGTTTTTAACAAACATAAGACGAACTTGAAACCggaaatgttgaaaaata
tgttGGACTTGTTTATCCATACATCTAGTGATGAAGAGtttcttcaaaaa
aatggaataaGCGAGTTAACACGTGACACGATTGAAATGGTGATGATGGA
CCTCCTTGATGCGAGTGTTGACAATACAGCTGTAAGTCTTTCTTGGATAA
TTTTGTACTTATTACATCATCCAAAATACATGAGAGAGGCTTACAATGAG
ATTAAACACGTGGTTGGTGCAAAAAAATACCCAAAGATGAGCGATCGAAT
CTCACTACCCCTTGTTCAGGCTATCATACAAGAGACTTTACGTTTGGCAA
TAGGCCCTTTAAGTTTACCACATAAATCAACGAAAGATAGCTCACTGAAt
ggaaaatcaatcaaaaagggTACTCAAGTGTTGTTTCATATTTGGAATAT
TCATCGAGACGAGCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGC
GTTGGNCTCACTGAAtggaaaatcaatcaaaaagggTACTCAAGTGTTGT
TTCATATTTGGAATATTCATCGAGACGAGCGGTACTGGAATGATCCAGAA
ATCTTTAAGCCAGAGCGTTGGATAgatgaaaatggaaatttttcaccaaa
aatttGTAAAAGTTACTTACCGTTTTTGATGGGCAAGCGCGTGTGCTTTG
GTGAGCAAATTGCAAGAACAGAGTTATTTATAGCTCTAACAGGATTATTG
GTTGATTTTCATATCGAACCAGAATCTGGATTGCTACCAAGTCTAACTGA
TGTCACCATAGGTGTTAACCAATACATGACACCCTTATACAAAGTAATTC
TTACAAAACGAGATGTATAAGAAGAAACCGATGGTTATCATCATACCATG
TAATACCAATTAATGCTTTTCATGATGCCAGAGCATGGGAACGTCTTCAG
TCTTCTACGGTATCGATACCGATAGTGAACAAATAGAAATTGGATTGAAA
ACTCTAttattctttgttaaaaattataaaaatatacaaaatatgaTAAA
TATAAATATAGTATAATAGGAAATATAATATCACGGGTATTACTCTTACA
GTGCATCAATCTGACTTTAGTTCATATAAGTCATTTCCTCGTGGTCGGTG
TTGGTGGTTAATTTatacaagaaatttttttgattatatATCNN Run BLAST on NCBI protein sequence of TCONS_00041834-protein >TCONS_00041834-protein ID=TCONS_00041834-protein|Name=TCONS_00041834-protein|organism=Clytia hemisphaerica|type=polypeptide|length=287bp
XSLKMYANLDGKLEVKVAQEVEQMNGRLMEKTNEPVNLNVEIRLFMTNII
STIVLGERYENIENPTFQKILELNNYLHYAVYHGDPISISKWQKYLPIHS
TRMLSSYLAKRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHTSSDEEFLQK
NGISELTRDTIEMVMMDLLDASVDNTAVSLSWIILYLLHHPKYMREAYNE
IKHVVGAKKYPKMSDRISLPLVQAIIQETLRLAIGPLSLPHKSTKDSSLN
GKSIKKGTQVLFHIWNIHRDERYWNDPEIFKPERWXH Run BLAST on NCBI transcript from alignment at sc0003041:7970..10555- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041834 ID=TCONS_00041834|Name=TCONS_00041834|organism=Clytia hemisphaerica|type=transcript|length=2586bp|location=Sequence derived from alignment at sc0003041:7970..10555- (Clytia hemisphaerica)
NNGTCCTTAAAAATGTATGCCAATCTAGATGGAAAACTTGAAGTGAAAGT
TGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGAGAAAACTAATG
AACCTGTTAATCTAAACGTGGAAATAAGTAAGTTTTTTTCAGACAGTTTC
TTTAGAAATTATCTACCGAACGTCTCTAATTTTCTCTGTCAAAAGTAAAG
ATATTTGGTCAATGGTTTTAGGGTTAAAGTCAAATAATACATGTTTGTTA
GGCTATGGTCTACGCCGTTCTAAAAGACTATTTTTCTGACACTATCTGCT
TGAACACCCCTGTCTCATTTTTCTGACACTATCTACTTTAAGCGTACAAA
CTTTCGCGAGGTCGAAAATTCGCGAAATTTATGACATTTACTTTCGCGAA
TTTAAGGAAAAAATTTCGTGAATTGGGTGATCAAAATGAAAATTTTCACA
CGAAAAATAGCTTAAGAGTGACAAATGCTTCTCGAATTCGATTAAAAACT
GGTAATATATGACCTCAATGAGGCTTTCAAGGAATAGAAATGCTATTTTT
TTATTCTGATTTCGAAACTTTACAGATTTTCAACTTTTTCAAGAATTTTT
TGCGAGCATAAACTTTCGCGAATCGCCTTGTTAAGAATTTTCAAAGACAT
TTTCTTTCGCGAAAAAGGCCAAAATTCGCAAAAGTCGCAAAAGTTTAATA
CTTGAACTACACCCCTCTCTTATTTTTCTGACATTATCTACTTGAACACC
CCTGTCTCATTTTTCTGACATTATCANGAATTTTCAAAGACATTTTCTTT
CGCGAAAAAGGCCAAAATTCGCAAAAGTCGCGAAAGTTTAATACTTGAAC
ACCCCTGTGAGGTGACTCTGAATAAAATCAAATTTTGAGATAAAAAAACT
CACTGGGGTTGAAATTTTTACCTTCACCGGGATAGGGAGGAATATTTTCC
TTGAGTTCAAACTATAAAACTGATAACCTTAGTATACTTTGGCGTTTTGG
CTCCATCCCTCTTAAGATTAGATTTAATTATAATAATTGTGAGTGGGATG
TCATCATGTCAAAAATCTTTTAAAAAAGTCGAAAATGAAGATAAAAATGA
ATAAGAAAAAATCAACTCCTGGTAGAAAAGCTTACAGTATTGAATGGATT
AATTTTTTCCCACTTTTAGGGTTGTTCATGACAAATATTATCTCCACAAT
AGTACTTGGTGAAAGATACGAAAATATAGAAAACCCCACATTTCAAAAGA
TATTAGAATTAAATAACTATTTACATTATGCTGTATATCATGGTGATCCG
ATTTCAATTTCAAAATGGCAGAAATATCTTCCTATTCACTCGACTAGAAT
GTTATCAAGCTACTTAGCAAAGAGAGATGAACATTTCAGAAATGTTTTTA
ACAAACATAAGACGAACTTGAAACCGGAAATGTTGAAAAATATGTTGGAC
TTGTTTATCCATACATCTAGTGATGAAGAGTTTCTTCAAAAAAATGGAAT
AAGCGAGTTAACACGTGACACGATTGAAATGGTGATGATGGACCTCCTTG
ATGCGAGTGTTGACAATACAGCTGTAAGTCTTTCTTGGATAATTTTGTAC
TTATTACATCATCCAAAATACATGAGAGAGGCTTACAATGAGATTAAACA
CGTGGTTGGTGCAAAAAAATACCCAAAGATGAGCGATCGAATCTCACTAC
CCCTTGTTCAGGCTATCATACAAGAGACTTTACGTTTGGCAATAGGCCCT
TTAAGTTTACCACATAAATCAACGAAAGATAGCTCACTGAATGGAAAATC
AATCAAAAAGGGTACTCAAGTGTTGTTTCATATTTGGAATATTCATCGAG
ACGAGCGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGGNCT
CACTGAATGGAAAATCAATCAAAAAGGGTACTCAAGTGTTGTTTCATATT
TGGAATATTCATCGAGACGAGCGGTACTGGAATGATCCAGAAATCTTTAA
GCCAGAGCGTTGGATAGATGAAAATGGAAATTTTTCACCAAAAATTTGTA
AAAGTTACTTACCGTTTTTGATGGGCAAGCGCGTGTGCTTTGGTGAGCAA
ATTGCAAGAACAGAGTTATTTATAGCTCTAACAGGATTATTGGTTGATTT
TCATATCGAACCAGAATCTGGATTGCTACCAAGTCTAACTGATGTCACCA
TAGGTGTTAACCAATACATGACACCCTTATACAAAGTAATTCTTACAAAA
CGAGATGTATAAGAAGAAACCGATGGTTATCATCATACCATGTAATACCA
ATTAATGCTTTTCATGATGCCAGAGCATGGGAACGTCTTCAGTCTTCTAC
GGTATCGATACCGATAGTGAACAAATAGAAATTGGATTGAAAACTCTATT
ATTCTTTGTTAAAAATTATAAAAATATACAAAATATGATAAATATAAATA
TAGTATAATAGGAAATATAATATCACGGGTATTACTCTTACAGTGCATCA
ATCTGACTTTAGTTCATATAAGTCATTTCCTCGTGGTCGGTGTTGGTGGT
TAATTTATACAAGAAATTTTTTTGATTATATATCNN Coding sequence (CDS) from alignment at sc0003041:7970..10555- >TCONS_00041834 ID=TCONS_00041834|Name=TCONS_00041834|organism=Clytia hemisphaerica|type=CDS|length=1728bp|location=Sequence derived from alignment at sc0003041:7970..10555- (Clytia hemisphaerica)
GGTTGTTCATGACAAATATTATCTCCACAATAGTACTTGGTGAAAGATAC
GAAAATATAGAAAACCCCACATTTCAAAAGATATTAGAATTAAATAACTA
TTTACATTATGCTGTATATCATGGTGATCCGATTTCAATTTCAAAATGGC
AGAAATATCTTCCTATTCACTCGACTAGAATGTTATCAAGCTACTTAGCA
AAGAGAGATGAACATTTCAGAAATGTTTTTAACAAACATAAGACGAACTT
GAAACCGGAAATGTTGAAAAATATGTTGGACTTGTTTATCCATACATCTA
GTGATGAAGAGTTTCTTCAAAAAAATGGAATAAGCGAGTTAACACGTGAC
ACGATTGAAATGGTGATGATGGACCTCCTTGATGCGAGTGTTGACAATAC
AGCTGTAAGTCTTTCTTGGATAATTTTGTACTTATTACATCATCCAAAAT
ACATGAGAGAGGCTTACAATGAGATTAAACACGTGGTTGGTGCAAAAAAA
TACCCAAAGATGAGCGATCGAATCTCACTACCCCTTGTTCAGGCTATCAT
ACAAGAGACTTTACGTTTGGCAATAGGCCCTTTAAGTTTACCACATAAAT
CAACGAAAGATAGCTCACTGAATGGAAAATCAATCAAAAAGGGTACTCAA
GTGTTGTTTCATATTTGGAATATTCATCGAGACGAGCGGTACTGGAATGA
TCCAGAAATCTTTAAGCCAGAGCGTTGGNCTCACTGANNGTCCTTAAAAA
TGTATGCCAATCTAGATGGAAAACTTGAAGTGAAAGTTGCACAAGAAGTT
GAACAAATGAATGGACGATTAATGGAGAAAACTAATGAACCTGTTAATCT
AAACGTGGAAATAAGGTTGTTCATGACAAATATTATCTCCACAATAGTAC
TTGGTGAAAGATACGAAAATATAGAAAACCCCACATTTCAAAAGATATTA
GAATTAAATAACTATTTACATTATGCTGTATATCATGGTGATCCGATTTC
AATTTCAAAATGGCAGAAATATCTTCCTATTCACTCGACTAGAATGTTAT
CAAGCTACTTAGCAAAGAGAGATGAACATTTCAGAAATGTTTTTAACAAA
CATAAGACGAACTTGAAACCGGAAATGTTGAAAAATATGTTGGACTTGTT
TATCCATACATCTAGTGATGAAGAGTTTCTTCAAAAAAATGGAATAAGCG
AGTTAACACGTGACACGATTGAAATGGTGATGATGGACCTCCTTGATGCG
AGTGTTGACAATACAGCTGTAAGTCTTTCTTGGATAATTTTGTACTTATT
ACATCATCCAAAATACATGAGAGAGGCTTACAATGAGATTAAACACGTGG
TTGGTGCAAAAAAATACCCAAAGATGAGCGATCGAATCTCACTACCCCTT
GTTCAGGCTATCATACAAGAGACTTTACGTTTGGCAATAGGCCCTTTAAG
TTTACCACATAAATCAACGAAAGATAGCTCACTGAATGGAAAATCAATCA
AAAAGGGTACTCAAGTGTTGTTTCATATTTGGAATATTCATCGAGACGAG
CGGTACTGGAATGATCCAGAAATCTTTAAGCCAGAGCGTTGGNCTCACTG
ANNGTCCTTAAAAATGTATGCCAATCTAGATGGAAAACTTGAAGTGAAAG
TTGCACAAGAAGTTGAACAAATGAATGGACGATTAATGGAGAAAACTAAT
GAACCTGTTAATCTAAACGTGGAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041834-exon-sc0003041-1575043694:10429..10555 | TCONS_00041834-exon-sc0003041-1575043694:10429..10555 | Clytia hemisphaerica | exon |
| TCONS_00041834-exon-sc0003041-1575043694:7970..9386 | TCONS_00041834-exon-sc0003041-1575043694:7970..9386 | Clytia hemisphaerica | exon |
| TCONS_00041834-exon-sc0003041-1510915933:10429..10555 | TCONS_00041834-exon-sc0003041-1510915933:10429..10555 | Clytia hemisphaerica | exon |
| TCONS_00041834-exon-sc0003041-1510915933:7970..9386 | TCONS_00041834-exon-sc0003041-1510915933:7970..9386 | Clytia hemisphaerica | exon |
| TCONS_00041834-exon-sc0003041-1491911889:10429..10555 | TCONS_00041834-exon-sc0003041-1491911889:10429..10555 | Clytia hemisphaerica | exon |
| TCONS_00041834-exon-sc0003041-1491911889:7970..9386 | TCONS_00041834-exon-sc0003041-1491911889:7970..9386 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003041 | supercontig | sc0003041:7970..10555 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
BLAST of TCONS_00041834 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 3.396e-36 Identity = 81/288 (28.12%), Postives = 148/288 (51.39%), Query Frame = 1
Query: 4 SLKMYANLDGKLEVKVAQEVEQMNGRLMEKTNEPVNLNVEIRLFMTNIISTIVLGERYENIENPTFQKILELNNYLHYAVYHGDPISISKWQKYLPIHSTRMLSSYLAKRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHT--SSDEEFLQKNGISELTRDT-IEMVMMDLLDASVDNTAVSLSWIILYLLHHPKYMREAYNEIKHVVGAKKYPKMSDRISLPLVQAIIQETLRL-AIGPLSLPHKSTKDSSLNGKSIKKGTQVLFHIWNIHRDERYWNDPEIFKPERW 855
+ ++ + D KLE + QE+ + L + ++++ + + +TN+IS I Y+N +P I N + + + + W K P + L S++ R++ + +K + + + NMLD + +SD + SEL D I + D+ A V+ T + W + +LLH+P+ ++ Y EI VG + P +SDR L L++A I+E LRL + P+ +PHK+ DSS+ ++ KGT+V+ ++W +H +E+ W+ P+ F PER+
Sbjct: 131 TFALFKDGDQKLEKIICQEISTLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKN-GDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERF 417 HSP 2 Score: 81.6481 bits (200), Expect = 2.275e-16 Identity = 47/128 (36.72%), Postives = 72/128 (56.25%), Query Frame = 3
Query: 873 SIKKGTQVLFHIWNIHRDERYWNDPEIFKPERWIDENGN--FSPKICKSYLPFLMGKRVCFGEQIARTELFIALTGLLVDFHIE-PESGLLPSLTDVTIGVNQYMTPLYKVILTKRDV*EETDGYHHT 1247
++ KGT+V+ ++W +H +E+ W+ P+ F PER+++ G SP + SYLPF G R C GE +AR ELF+ + LL F +E P+ G LPSL + V ++ +KV + R E T
Sbjct: 385 AVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSV--SYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVV--FLIDSFKVKIKVRQAWREAQAEGST 508
The following BLAST results are available for this feature:
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