TCONS_00041833 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041833
Unique NameTCONS_00041833
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041833 ID=TCONS_00041833|Name=TCONS_00041833|organism=Clytia hemisphaerica|type=transcript|length=566bp
NNGGATGATAAGTTCGTTTTGTTTGAGTGAGCTTCATTTGCTTCCTGAGT
TTTTAATCGTTCGTTTGGACttgattttataatttatcaatcacgttttt
caaaatgttctacTTCTTTTTCGTTGCGCTGTCGTTTCCTACCATCAAGA
GGAAACGAACTCCCGGCAGTTATTATTCACCGGAGAGATAACACCGATCG
TGGGTCGCGGCCGTCATCATTTTGGCCAGTGTTTCCTTGGGATGGGTTGC
CACCTCGGAAATCCTATAATAAGGAAGACAACATCGAACGTAagtggaaa
aaaaattctatattaATTTNAAAATTCTATATTAATTTACaatcaaatat
taaatattaagaCGTCCTAAAGTTCTCTGATACCAGATCATTGaaccaaa
taaataaaatactacaaaaaaattttaatcgaAAATTTCTAATCAAATTT
TATATACAAATCTTCATTTTATGATCCACTAATAACATTCTTGTTACAGT
TCCTGATGGTTTCTCTTCATTATTTTTCAGGGAATAAACTGAAGAACAAC
CCCGTAAGTCCGTCCG
Run BLAST on NCBI

transcript from alignment at sc0003040:2..567

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041833 ID=TCONS_00041833|Name=TCONS_00041833|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0003040:2..567 (Clytia hemisphaerica)
CGGACGGACTTACGGGGTTGTTCTTCAGTTTATTCCCTGAAAAATAATGA
AGAGAAACCATCAGGAACTGTAACAAGAATGTTATTAGTGGATCATAAAA
TGAAGATTTGTATATAAAATTTGATTAGAAATTTtcgattaaaatttttt
tgtagtattttatttatttggttCAATGATCTGGTATCAGAGAACTTTAG
GACGtcttaatatttaatatttgattGTAAATTAATATAGAATTTTNAAA
TtaatatagaattttttttccactTACGTTCGATGTTGTCTTCCTTATTA
TAGGATTTCCGAGGTGGCAACCCATCCCAAGGAAACACTGGCCAAAATGA
TGACGGCCGCGACCCACGATCGGTGTTATCTCTCCGGTGAATAATAACTG
CCGGGAGTTCGTTTCCTCTTGATGGTAGGAAACGACAGCGCAACGAAAAA
GAAgtagaacattttgaaaaacgtgattgataaattataaaatcaaGTCC
AAACGAACGATTAAAAACTCAGGAAGCAAATGAAGCTCACTCAAACAAAA
CGAACTTATCATCCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025739XLOC_025739Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041833-exon-sc0003040-1491911889:2..567TCONS_00041833-exon-sc0003040-1491911889:2..567Clytia hemisphaericaexon
TCONS_00041833-exon-sc0003040-1510915933:2..567TCONS_00041833-exon-sc0003040-1510915933:2..567Clytia hemisphaericaexon
TCONS_00041833-exon-sc0003040-1575043694:2..567TCONS_00041833-exon-sc0003040-1575043694:2..567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003040supercontigsc0003040:2..567 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.160429	0	0	0	0	0.158058	0	0	0.127878	0.204339	0.162339	0.120093	0.292695	0.826951	1.23956	0.251791	0.5305	0.634997	0.443179	0.168987	0.587506	0	0.307151	0.910523	0	0.176329	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041833 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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