TCONS_00041829 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041829
Unique NameTCONS_00041829
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length348

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041829 ID=TCONS_00041829|Name=TCONS_00041829|organism=Clytia hemisphaerica|type=transcript|length=348bp
ATCATGTATATATTGTCTAGATATTAATggtcaaaacttggaaaagcttg
cacTCTTCTCAGTGCCCCATTTTTAGCCTTGATGATGATGCCAGatgcta
aaaagaaaatatatcataaTAGATGCTTTTACTCCCTGTTTACCTGCTTG
TATCTTTTGTGCGCTCTCTGGGATCCTTTGGTACGTTTtgtgtggtcctt
tttgtacactACCCATGGTCCTTCTTGAATACtttcagggtaccttttgt
acgctctccgttggtcctttttgtgtgttcctgggtacctttttgtacgc
tccccgtgtaccttattgtacgttccagtGTATCTTATTGTGCCGTTC
Run BLAST on NCBI

transcript from alignment at sc0003038:14518..14865

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041829 ID=TCONS_00041829|Name=TCONS_00041829|organism=Clytia hemisphaerica|type=transcript|length=348bp|location=Sequence derived from alignment at sc0003038:14518..14865 (Clytia hemisphaerica)
GAACGGCACAATAAGATACactggaacgtacaataaggtacacggggagc
gtacaaaaaggtacccaggaacacacaaaaaggaccaacggagagcgtac
aaaaggtaccctgaaaGTATTCAAGAAGGACCATGGGTagtgtacaaaaa
ggaccacacaAAACGTACCAAAGGATCCCAGAGAGCGCACAAAAGATACA
AGCAGGTAAACAGGGAGTAAAAGCATCTAttatgatatattttcttttta
gcatCTGGCATCATCATCAAGGCTAAAAATGGGGCACTGAGAAGAgtgca
agcttttccaagttttgaccATTAATATCTAGACAATATATACATGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025735XLOC_025735Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041829-exon-sc0003038-1491911889:14518..14865TCONS_00041829-exon-sc0003038-1491911889:14518..14865Clytia hemisphaericaexon
TCONS_00041829-exon-sc0003038-1510915933:14518..14865TCONS_00041829-exon-sc0003038-1510915933:14518..14865Clytia hemisphaericaexon
TCONS_00041829-exon-sc0003038-1575043694:14518..14865TCONS_00041829-exon-sc0003038-1575043694:14518..14865Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003038supercontigsc0003038:14518..14865 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.93323	8.7113	26.8761	22.9013	13.4238	10.6076	17.0635	19.6611	13.3351	17.3169	20.687	13.9388	18.1631	19.9203	18.9859	26.1296	15.9031	23.3702	17.6358	14.1959	11.3517	9.02764	4.09706	5.8533	17.2642	17.1199	16.7989	18.6753	12.7481	9.81338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041829 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top